Hereditary Colorectal Cancer — FAP vs Lynch Syndrome: Genes, Criteria, Screening and Surgery

Written & medically reviewed by the Kinase Medical Team · Last reviewed

Quick Answer

Familial adenomatous polyposis is an autosomal dominant APC (chromosome 5) tumour-suppressor defect causing hundreds to thousands of colonic adenomas and near-certain colorectal cancer by about age 40 without colectomy. Lynch syndrome is autosomal dominant mismatch repair gene mutation (MLH1, MSH2, MSH6, PMS2) with few polyps, microsatellite instability and an 80 percent lifetime colorectal cancer risk.

How do FAP and Lynch syndrome differ at a glance?

Inherited mutations cause roughly 5% to 10% of colorectal cancers, and the commonest hereditary form is Lynch syndrome. Familial adenomatous polyposis (FAP) is the second most common inherited polyposis syndrome and accounts for about 1% of colorectal cancer (StatPearls). They are the two syndromes exam-setters contrast most often: one is a polyposis syndrome, the other is non-polyposis.

FAP vs Lynch syndrome
FeatureFAPLynch syndrome (HNPCC)
GeneAPC tumour suppressor, chromosome 5Mismatch repair genes MLH1, MSH2, MSH6, PMS2 (and EPCAM deletions)
InheritanceAutosomal dominantAutosomal dominant
Polyp burdenHundreds to thousands of adenomas; teenage onsetFew (fewer than 10 adenomas cumulatively)
Site of tumoursWhole colon and rectumRight colon commonly, younger age
Cancer riskAlmost 100% by about age 40 if untreatedAbout 80% lifetime colorectal; up to 60% endometrial
Hallmark testCount of polyps; APC germline testMicrosatellite instability / IHC for MMR proteins
Share of colorectal cancerAbout 1%2% to 4%
FAP vs. Lynch (Familial Adenomatous Polyposis vs Hereditary Nonpolyposis Colorectal cancer)-OncologySide-by-side comparison of FAP and Lynch syndrome — genes, polyp burden, cancer risk and screening.Video: Medicosis Perfectionalis · 8:22 · Watch on YouTube · Loads from YouTube (privacy-enhanced mode) only when you press play.

What is familial adenomatous polyposis?

FAP results from a germline mutation of the APC gene, a tumour suppressor on chromosome 5, inherited in an autosomal dominant manner. Untreated patients develop hundreds to thousands of polyps throughout the colon and rectum, often in the early teens, with an almost 100% lifetime risk of colorectal cancer, typically by about age 40. Roughly 20% to 30% of patients have no family history because of de novo mutations, and 10% to 30% have no detectable APC mutation, yet relatives are still screened as for a proven mutation.

More than 100 adenomatous polyps should make you strongly consider FAP, and a finding of 10 or more colonic polyps at one colonoscopy is highly suggestive, especially in younger patients. Genetic testing is recommended when colonoscopy shows over 20 adenomatous polyps or when FAP-associated cancers are found.

Opened surgical specimen of the colon whose mucosa is densely covered with hundreds of small brown polyps, on a green drape.
A resected colon in familial adenomatous polyposis: the mucosa is carpeted with innumerable adenomatous polyps.Image: Department of Pathology, Calicut Medical College, CC BY-SA 4.0
FAP variants
VariantFeatures
Classic FAPHundreds to thousands of polyps, teenage onset
Attenuated FAPMilder; about 30 polyps, later onset (average above 50 years), predominantly right colon
Gardner syndromeColonic polyposis with osteomas and soft-tissue tumours
Turcot syndromeColonic polyposis with CNS tumours

What extracolonic features and screening does FAP need?

  • Congenital hypertrophy of the retinal pigment epithelium (CHRPE): flat pigmented retinal lesions, specific to FAP, usually asymptomatic.
  • Gardner features: osteomas of the mandible or skull and dental abnormalities such as impacted teeth.
  • Upper GI: gastric and duodenal polyps with risk of gastric and duodenal cancer.
  • Other tumours: desmoid fibromatosis, hepatoblastoma and thyroid cancer.

In APC mutation carriers the National Comprehensive Cancer Network advice quoted in StatPearls is annual sigmoidoscopy or colonoscopy from age 10 to 15, with upper endoscopy at 20 to 25 years (earlier if colectomy happens before that) to examine the stomach and duodenum.

Endoscopic view of the bowel lining studded with many small raised polyps.
Endoscopic appearance of FAP: innumerable small mucosal polyps seen at sigmoidoscopy.Image: Samir (English Wikipedia), CC BY-SA 3.0

How is FAP treated?

Colectomy is the primary intervention that substantially lowers cancer risk. Total proctocolectomy with ileal pouch-anal anastomosis (or end ileostomy) gives the highest likelihood of eliminating at-risk mucosa. Total abdominal colectomy with ileorectal anastomosis is less extensive and preserves the rectum, improving continence and sexual function, but the retained rectum can still develop adenocarcinoma, so regular endoscopic surveillance (every 3 to 6 months in the chapter) is needed.

Drug options have limited success. Sulindac, an NSAID, reduced adenoma number by nearly 50% and size by 65% in small studies, but adenomas recurred when it was stopped; it is an option for patients with a retained rectum. See NSAIDs.

What is Lynch syndrome (HNPCC)?

Lynch syndrome arises from a germline mutation in one of four mismatch repair (MMR) genes — *MLH1, MSH2, MSH6, PMS2* — and large deletions in *EPCAM* can also cause it by silencing MSH2. MMR genes correct wrongly paired bases during DNA replication, so their failure leaves microsatellite instability (MSI). It is autosomal dominant, and first-degree relatives have a 50% chance of carrying the variant.

Lifetime risk of colorectal cancer is about 80% and of endometrial cancer up to 60%; endometrial cancer is the commonest malignancy after colorectal cancer. Other associated cancers include gastric, ovarian, small bowel, urothelial, prostate, biliary, pancreatic, adrenocortical and brain cancers, plus sebaceous gland adenomas and keratoacanthomas (Muir-Torre syndrome). Tumours tend to occur in the right colon, in younger patients, with synchronous or metachronous lesions, and they progress faster from adenoma to carcinoma.

Lynch Syndrome (Hereditary Non-Polyposis Colorectal Cancer) Genetics, Symptoms, Diagnosis, TreatmentLecture on Lynch syndrome — mismatch repair genes, associated cancers, diagnosis and management.Video: JJ Medicine · 17:22 · Watch on YouTube · Loads from YouTube (privacy-enhanced mode) only when you press play.

What are the Amsterdam II criteria and the Bethesda guidelines?

The Amsterdam II criteria need several relatives with a Lynch-related cancer (colorectal, endometrial, small bowel, ureter or renal pelvis) plus: at least 2 successive generations affected; one is a first-degree relative of the other two; at least 1 diagnosed before age 50; no evidence of FAP; and pathological verification. Remember it as the 3-2-1 rule: three relatives, two generations, one under 50. The revised Bethesda guidelines select tumours for MSI testing instead of families.

Revised Bethesda guidelines (any one)
SituationTrigger for MSI/IHC testing
Colorectal cancer ageDiagnosed before 50
Multiple tumoursSynchronous or metachronous colorectal or other Lynch-related tumours, any age
HistologyMSI-type features: tumour-infiltrating lymphocytes, Crohn-like reaction, mucinous or signet-ring, medullary
Family history 1One or more first-degree relatives with a Lynch cancer, one diagnosed before 50
Family history 2Two or more first- or second-degree relatives with Lynch cancers, any age

These criteria are imperfect: about 50% of carriers are missed, and about 50% of patients who meet them do not have Lynch syndrome. Persons who qualify undergo immunohistochemistry and/or MSI analysis, then germline testing. Absent staining for at least one MMR protein means mismatch repair deficiency. If MLH1 (alone or with PMS2) is lost, test for BRAF V600E or MLH1 promoter methylation: methylation points to a sporadic cancer rather than Lynch syndrome. Both PCR and IHC have a false-negative rate of about 5% to 10%.

How are Lynch syndrome carriers screened and treated?

Surveillance for MLH1, MSH2, MSH6, PMS2 and EPCAM carriers (NCCN, as cited in StatPearls)
OrganRecommendation
ColonColonoscopy from age 20 to 25, repeated every 1 to 2 years, or 5 years younger than the youngest person diagnosed
Colon surgeryColectomy if cancer or an unremovable advanced adenoma; preferred operation colectomy with ileorectal anastomosis; colonoscopy every 1 to 2 years afterwards
Endometrium / ovariesPelvic exam, transvaginal ultrasound, endometrial sampling and CA-125 yearly from age 30; hysterectomy with bilateral salpingo-oophorectomy after childbearing
Upper GIUpper endoscopy with extended duodenoscopy every 1 to 3 years from 30 to 35 in selected people; consider H. pylori testing
Urinary tractUrinalysis from 30 to 35

Aspirin may lower colon cancer risk in Lynch syndrome, but the optimal dose and duration remain uncertain; doses of 325 to 650 mg daily have been suggested, and 81 mg may help. MSI-high tumours trigger a heavy lymphocytic reaction, so immune checkpoint antibodies such as pembrolizumab are used against them. Family members should be told so that at-risk relatives can be tested. See NSAIDs for aspirin pharmacology.

Frequently asked questions

Which gene is mutated in familial adenomatous polyposis?
FAP results from a germline mutation of the APC gene, a tumour suppressor located on chromosome 5, inherited in an autosomal dominant pattern. Mutation carriers develop hundreds to thousands of colorectal polyps from the teenage years and face an almost 100 percent lifetime colorectal cancer risk, usually by about age 40, if the colon is not removed.
Which genes cause Lynch syndrome?
Lynch syndrome is caused by germline mutations in one of four mismatch repair genes: MLH1, MSH2, MSH6 and PMS2. Large deletions in EPCAM, a non-repair gene, can also cause it by silencing MSH2. The defect in DNA mismatch repair leads to microsatellite instability, which is detected by PCR or by loss of staining on immunohistochemistry.
What are the Amsterdam II criteria?
They require several relatives with a Lynch-related cancer (colorectal, endometrial, small bowel, ureter or renal pelvis) with at least two successive generations affected, one relative being first-degree to the other two, at least one case diagnosed before age 50, no evidence of FAP, and pathological verification. The mnemonic is three relatives, two generations, one under 50.
How do you tell Lynch syndrome from a sporadic MSI-high cancer?
If immunohistochemistry shows loss of MLH1 with or without PMS2, the tumour is tested for the BRAF V600E mutation or MLH1 promoter methylation. Methylation points to a sporadic cancer, which is more common in older patients. If those tests are negative, germline mutation testing for Lynch syndrome follows.
When should screening start in FAP and in Lynch syndrome?
In APC mutation carriers, annual sigmoidoscopy or colonoscopy starts at 10 to 15 years, with upper endoscopy at 20 to 25 years. In Lynch syndrome, colonoscopy starts at 20 to 25 years and repeats every 1 to 2 years, or 5 years before the youngest diagnosis in the family, whichever is earlier.
What is CHRPE and why does it matter?
Congenital hypertrophy of the retinal pigment epithelium appears as flat, localised pigmented retinal lesions on eye examination. StatPearls describes it as specific to FAP and usually asymptomatic. It can therefore be a useful clue in a family with colonic polyposis, alongside osteomas and dental abnormalities in Gardner syndrome.
Is Turcot syndrome FAP or Lynch syndrome?
Turcot syndrome describes colonic polyposis with central nervous system tumours and is classified as a variant of FAP. StatPearls also lists brain tumours, usually glioblastoma, among Lynch-associated cancers and attributes that pairing to Turcot syndrome. Muir-Torre syndrome, with sebaceous adenomas and keratoacanthomas, is the skin variant linked to Lynch syndrome.

Sources

  1. StatPearls — Lynch Syndrome (Hereditary Nonpolyposis Colorectal Cancer) (NCBI Bookshelf)
  2. StatPearls — Familial Adenomatous Polyposis (NCBI Bookshelf)
  3. Wikimedia Commons — Familial Adenomatous Polyposes colon -2 (CC BY-SA 4.0)

For exam preparation and education only — not a substitute for clinical judgement or local guidelines. How we write and review these pages: editorial policy.

Revise Hereditary Colorectal Cancer: FAP and Lynch Syndrome with questions

Kinase: NEET-PG & INICET has previous-year papers, a subject-wise QBank and Grand Tests with explanations — on Android, iOS and the web.