Galactosaemia and Glycogen Storage Diseases — Enzyme Defects, Clinical Clues and Management

Written & medically reviewed by the Kinase Medical Team · Last reviewed

Quick Answer

Classic galactosaemia is deficiency of galactose-1-phosphate uridylyltransferase (GALT): after milk feeds the neonate develops jaundice, hepatomegaly, hypoglycaemia, bleeding and E. coli sepsis, and later cataract. Glycogen storage diseases are enzyme defects of glycogen breakdown that cause fasting hypoglycaemia with hepatomegaly (liver types) or exercise intolerance (muscle types).

What are galactosaemia and glycogen storage diseases?

Both groups are inherited inborn errors of carbohydrate metabolism, and most are autosomal recessive. In galactosaemia the body cannot convert galactose, the sugar released from lactose in milk, into glucose. In glycogen storage diseases (GSDs) an enzyme or transporter for making or breaking down glycogen is defective, so glycogen either cannot be released as glucose or builds up abnormally. Manifestations range from neonatal life to adulthood.

The liver holds the highest percentage of glycogen by weight (about 10%), muscle about 2%, but because total muscle mass is larger, total muscle glycogen is roughly twice that of liver. That is why hepatic defects produce hypoglycaemia and hepatomegaly, while muscle defects give cramps, exercise intolerance and myoglobinuria.

Glycogen Storage Diseases: Pathophysiology and TreatmentEducator walkthrough of glycogen metabolism, the enzyme defects and treatment of glycogen storage diseases.Video: Lecturio Medical · 11:56 · Watch on YouTube · Loads from YouTube (privacy-enhanced mode) only when you press play.
Two groups at a glance
FeatureGalactosaemiaGlycogen storage diseases
SubstrateGalactose (from lactose)Glycogen
Typical onsetDays after milk feeds beginNeonate to adult depending on type
HallmarksJaundice, hepatomegaly, bleeding, E. coli sepsis, cataractFasting hypoglycaemia, hepatomegaly, or exercise intolerance
Cornerstone of treatmentLactose and galactose restrictionFrequent feeds / uncooked cornstarch for liver types; enzyme replacement in type II
InheritanceAutosomal recessiveMostly autosomal recessive; GSD IX (IXa) is X-linked

Which enzyme is deficient in galactosaemia, and what builds up?

Classic galactosaemia is caused by deficiency of galactose-1-phosphate uridylyltransferase (GALT), encoded by the GALT gene. The normal pathway converts galactose to galactose-1-phosphate (galactokinase), then GALT converts galactose-1-phosphate and UDP-glucose into UDP-galactose and glucose-1-phosphate. With GALT absent, galactose-1-phosphate accumulates in red cells and tissues, and galactose is diverted to galactitol (a polyol made by aldose reductase).

Galactose metabolism pathway with a red cross over the GALT step and upward arrows beside galactose, galactose 1-phosphate and galactitol.
Block at GALT: galactose and galactose 1-phosphate pile up, and some galactose is shunted to galactitol through aldose reductase.Image: Canada Hky, CC0
Galactosemia, Galactokinase deficiency, Lactose Intolerance - Lactose Metabolism Disorders - BiochemAnimated explanation of galactose metabolism, galactosaemia and related lactose-handling disorders.Video: Medicosis Perfectionalis · 9:51 · Watch on YouTube · Loads from YouTube (privacy-enhanced mode) only when you press play.

Galactosaemia caused by GALT deficiency is divided into three phenotypes: classic galactosaemia, clinical variant galactosaemia (seen in African Americans and native Africans in South Africa, with residual GALT activity, sometimes missed by newborn screening that measures only blood galactose), and biochemical variant galactosaemia, of which Duarte variant is the example. Inheritance is autosomal recessive: each pregnancy of a couple with an affected child has a 25% chance of an affected baby.

How does galactosaemia present?

Within days of ingesting breast milk or lactose-containing formula, an infant with classic galactosaemia develops life-threatening complications: feeding problems, failure to thrive, hypoglycaemia, hepatocellular damage, bleeding diathesis and jaundice. Untreated infants are prone to E. coli sepsis. If a lactose-restricted diet is provided during the first ten days of life, the neonatal signs usually resolve quickly and liver failure, sepsis and neonatal death are prevented.

Classic galactosaemia: acute and long-term problems
TimeProblems
Neonatal (after milk)Poor feeding, vomiting, jaundice, hepatomegaly, abnormal liver function, coagulopathy, hypoglycaemia, ascites, E. coli sepsis
EyesCataracts (reported in 30% of 314 individuals in one series); nearly half were mild or transient and resolved with dietary treatment
Despite early dietSpeech problems, poor growth, poor intellectual function, extrapyramidal movement disorder with ataxia
FemalesHypergonadotropic hypogonadism / premature ovarian failure

How is galactosaemia diagnosed and treated?

Diagnosis is established by elevated erythrocyte galactose-1-phosphate, reduced erythrocyte GALT activity and/or biallelic pathogenic variants in GALT. In classic galactosaemia erythrocyte galactose-1-phosphate is usually above 10 mg/dL (normal is below 1 mg/dL), plasma free galactose is usually above 10 mg/dL, and erythrocyte GALT activity is absent or barely detectable. In clinical variant galactosaemia GALT activity is close to or above 1% of control but probably never above 10-15%.

  • Newborn screening (erythrocyte galactose-1-phosphate and blood galactose and/or GALT activity) detects virtually all affected infants if galactosaemia is in the panel.
  • Screen-positive newborn: begin dietary intervention immediately while confirmatory testing is under way.
  • Diet: restrict galactose and replace all milk products with lactose-free formulas (for example soy-based Isomil or Prosobee) containing non-galactose carbohydrates. Avoid breast milk, lactose-containing formula, cow's milk, dairy products and medicines with lactose.
  • Surveillance: biochemical genetics review every three months in the first year, six-monthly in the second year, then yearly; monitor galactose-1-phosphate, urinary galactitol, cataracts, speech, development, movement disorder and, in females, ovarian function.
  • Pregnancy: women with classic galactosaemia should keep a lactose-restricted diet.

How are glycogen storage diseases classified?

GSDs are numbered roughly in the order of recognition and grouped by the organ mainly affected. The key ideas: glycogen is a branched polymer with about 95% α-1,4 links and α-1,6 branch points. Synthase makes α-1,4 links, the branching enzyme (GBE1) makes branches, phosphorylase releases glucose-1-phosphate from α-1,4 links, and the debranching enzyme removes branches. Muscle lacks glucose-6-phosphatase, so it cannot release free glucose into the blood.

Grouping of GSDs
Primarily affectsTypes (enzyme)
Liver0a (glycogen synthase-2), Ia (glucose-6-phosphatase), Ib (glucose-6-phosphate transporter), III (debrancher), IV (branching enzyme), VI (liver phosphorylase), IXa (phosphorylase kinase), Fanconi-Bickel (GLUT2)
Skeletal muscleV (muscle phosphorylase), VII (phosphofructokinase), X (phosphoglycerate mutase), XI (lactate dehydrogenase A), XII (aldolase A), XIII (β-enolase), XIV (phosphoglucomutase-1)
Skeletal and cardiac muscleIIa (lysosomal acid maltase), IIb (LAMP-2), XV (glycogenin-1), 0b (muscle glycogen synthase)

GSD type II is unique because it is also a lysosomal storage disease: the defective enzyme is lysosomal acid α-glucosidase (GAA), and glycogen accumulates inside lysosomes.

What are the enzyme, eponym and key feature of each GSD type?

High-yield GSD table (all autosomal recessive unless stated)
Type (eponym)DefectKey features
0aLiver glycogen synthase (GYS2)Fasting ketotic hypoglycaemia; reduced liver glycogen (storage deficiency, not excess)
Ia (von Gierke)Glucose-6-phosphatase (G6PC)Hypoglycaemia, lactic acidosis, hypertriglyceridaemia, hyperuricaemia, hepatomegaly, renal dysfunction
IbGlucose-6-phosphate translocase (SLC37A4)As Ia plus neutropenia, neutrophil dysfunction and inflammatory bowel disease
II (Pompe)Lysosomal acid α-glucosidase (GAA)Hypertrophic cardiomyopathy, hypotonia, motor delay; enzyme replacement therapy
III (Cori / Forbes)Debranching enzyme (AGL)Hypoglycaemia with ketosis, hyperlipidaemia, hepatomegaly, raised liver enzymes, myopathy; periportal fibrosis
IV (Andersen)Branching enzyme (GBE1)Abnormal polyglucosan bodies; hepatosplenomegaly, progressive cirrhosis, cardiomyopathy, hypotonia
V (McArdle)Muscle phosphorylase (PYGM)Exercise intolerance, cramps, rhabdomyolysis, myoglobinuria; second wind phenomenon
VI (Hers)Liver phosphorylase (PYGL)Hepatomegaly, hypoglycaemia with ketosis, raised transaminases, hyperlipidaemia, liver fibrosis
VII (Tarui)Muscle phosphofructokinase (PFKM)Haemolytic anaemia, muscle cramps with exertion, gout / hyperuricaemia
IXa (X-linked)Liver phosphorylase kinase α2 (PHKA2)Hepatomegaly, growth retardation, motor delay; type IX is the most common GSD subtype

What is von Gierke disease (GSD type I)?

GSD I disrupts the final step of both glycogenolysis and gluconeogenesis. In hepatocytes, glucose-6-phosphate enters the endoplasmic reticulum through the translocase (G6PT), where glucose-6-phosphatase converts it to glucose. A defect in the enzyme (Ia) or the transporter (Ib) leaves glucose-6-phosphate in the cell, which is pushed into glycolysis, causing lactic acidosis, and into lipid and urate pathways, causing hyperlipidaemia and hyperuricaemia. Glycogen accumulates in liver, kidney and intestine.

Flow diagram of glucose-6-phosphate in the endoplasmic reticulum and cytoplasm with boxes for fasting hypoglycaemia, hyperuricaemia, hepatomegaly, lactic acidosis and hypercholesterolaemia.
Consequences of glucose-6-phosphatase deficiency: fasting hypoglycaemia plus lactic acidosis, hyperuricaemia, hepatomegaly and hyperlipidaemia.Image: Dr.Biology, CC BY-SA 4.0
  • Presentation: often at 3 to 6 months with hepatomegaly or fasting hypoglycaemia (seizures) when feeding intervals lengthen; recurrent hypoglycaemia can impair development.
  • Laboratory: hypoglycaemia, lactic acidosis, hyperuricaemia, hypercholesterolaemia, hypertriglyceridaemia; neutropenia in Ib.
  • Avoid the glucagon stimulation test: it can precipitate acidosis by raising blood lactate without raising glucose.
  • Diagnosis: mutation analysis is first-line (G6PC sequencing if neutropenia is absent).
  • Complications: short stature, osteopenia, nephropathy, gout, hepatocellular adenoma/carcinoma risk, and in Ib recurrent infections.

How do muscle GSDs and Pompe disease differ?

McArdle disease (GSD V) is deficiency of muscle glycogen phosphorylase (myophosphorylase), autosomal recessive, usually presenting in childhood or adolescence. Brief, moderate-to-intense exercise causes fatigue, cramps and weakness, with rhabdomyolysis and myoglobinuria (dark urine) in severe episodes; creatine kinase can exceed 1,000 U/L. A second wind phenomenon occurs, and it is not seen in other conditions with similar features. In the forearm exercise test, lactate and ammonia are compared before and after exercise; because glycogenolysis is blocked, no normal lactate rise occurs.

Pompe disease - causes, symptoms, diagnosis, treatment, pathologyShort overview of Pompe disease (GSD II): lysosomal glycogen accumulation, cardiac and muscle involvement, and enzyme replacement.Video: Osmosis from Elsevier · 5:01 · Watch on YouTube · Loads from YouTube (privacy-enhanced mode) only when you press play.
Liver vs muscle patterns
ClueThink of
Hypoglycaemia after a short fastGSD I or III
Hypoglycaemia after an overnight fastGSD 0, VI or IX
Ketosis (β-hydroxybutyrate above 2.5 mmol/L) with hepatomegaly, raised triglyceridesHepatic GSD 0, III, VI, IX
Cramps after brief intense exercise, high CK, myoglobinuriaMuscle GSD V (fatty-acid oxidation defects typically appear after prolonged exercise)
Cardiomegaly / cardiomyopathy with hypotoniaGSD II (Pompe); also considered in III and IV

How are GSDs diagnosed and managed?

Evaluation combines clinical features, biochemical tests (glucose, lactate, uric acid, lipids, liver enzymes, creatine kinase, urinary myoglobin) and genetic testing, which has reduced the need for liver or muscle biopsy. Biopsy patterns still appear in exams: liver biopsy in type I shows pale, swollen hepatocytes with steatosis and nuclear hyperglycogenation; fibrosis is prominent in types III, IV and VI; in McArdle disease muscle staining for phosphorylase activity is negative with subsarcolemmal PAS-positive glycogen deposits.

  • No cure: treatment aims to prevent hypoglycaemia, hyperlactataemia, hyperuricaemia and hyperlipidaemia.
  • Hypoglycaemia: frequent feeds of complex carbohydrate and uncooked cornstarch (a slow-releasing starch); in infants with type I, soy-based sugar-free formula every 2 to 3 hours with tube feeding overnight where needed.
  • Acute hypoglycaemia: oral carbohydrate or intravenous glucose. Glucagon does not help hypoglycaemia caused by a GSD.
  • Hyperuricaemia: allopurinol. Hyperlipidaemia: statins. Persistent lactic acidosis: citrate or bicarbonate.
  • GSD Ib neutropenia: G-CSF, and empagliflozin is now supported for neutropenia and neutrophil dysfunction.
  • GSD II: enzyme replacement therapy. Liver transplant is considered for hepatic failure or malignancy, but it does not correct cardiomyopathy.

What are the common traps and quick comparisons?

  • Substrate confusion: galactosaemia = GALT (not galactokinase) in the classic form; the toxic metabolite is galactose-1-phosphate.
  • Reducing sugar vs enzyme: diagnosis rests on erythrocyte galactose-1-phosphate and GALT activity, not on dietary history alone.
  • Deficiency vs accumulation: GSD 0 has too little glycogen; most other types have too much, and type IV has abnormal glycogen (polyglucosan).
  • Lysosomal GSD: type II is the only one that is also a lysosomal storage disease.
  • Muscle cannot release glucose: muscle has no glucose-6-phosphatase, so muscle GSDs do not cause hypoglycaemia.
  • X-linked GSD: type IX (IXa) is X-linked; the rest of this page's types are autosomal recessive.

Related metabolism pages: glycolysis steps and regulation, lysosomal storage disorders and amino acid disorders.

Frequently asked questions

Which enzyme is deficient in classic galactosaemia?
Classic galactosaemia is due to deficiency of galactose-1-phosphate uridylyltransferase (GALT). Without it, galactose-1-phosphate accumulates in red cells and tissues, and galactose is diverted to galactitol. Diagnosis rests on raised erythrocyte galactose-1-phosphate, absent or very low erythrocyte GALT activity, or biallelic pathogenic variants in the GALT gene.
What is the treatment of galactosaemia?
Treatment is lifelong restriction of galactose: all milk products are replaced with lactose-free formula, and breast milk, cow's milk, dairy products and medicines containing lactose are avoided. The diet should start immediately in a screen-positive newborn. If started in the first ten days of life, neonatal signs, liver failure and sepsis are usually prevented, though some long-term problems can persist.
Why do galactosaemia infants get E. coli sepsis?
Untreated infants with classic galactosaemia have a recognised risk of E. coli sepsis, one of the life-threatening early complications along with feeding problems, hepatocellular damage and bleeding. The mechanism is not detailed here, but the exam point is that a sick neonate with jaundice and hepatomegaly after milk feeds should be screened for galactosaemia.
What is the enzyme defect in von Gierke disease?
Von Gierke disease is GSD type Ia, caused by glucose-6-phosphatase deficiency (G6PC gene). Type Ib is due to the glucose-6-phosphate translocase (SLC37A4) and also causes neutropenia. Both block the final step of glycogenolysis and gluconeogenesis, producing fasting hypoglycaemia, lactic acidosis, hyperuricaemia, hyperlipidaemia and hepatomegaly.
Which GSD is a lysosomal storage disease?
GSD type II, Pompe disease, is also a lysosomal storage disease. The deficient enzyme is lysosomal acid alpha-glucosidase (GAA), so glycogen accumulates inside lysosomes. It mainly affects skeletal and cardiac muscle, causing hypertrophic cardiomyopathy, hypotonia and motor delay, and it can now be treated with enzyme replacement therapy.
What are the features of McArdle disease?
McArdle disease (GSD V) is muscle phosphorylase (myophosphorylase) deficiency. Patients have exercise-induced fatigue, cramps and weakness, sometimes rhabdomyolysis with myoglobinuria and creatine kinase above 1,000 U/L. A second wind phenomenon occurs. In a forearm exercise test, blood lactate fails to rise normally because glycogen breakdown is blocked.
Does glucagon treat hypoglycaemia in glycogen storage disease?
No. Glucagon works in insulin-mediated hypoglycaemia but will not correct hypoglycaemia caused by a GSD, because glycogen cannot be converted to glucose. Acute hypoglycaemia is corrected with oral carbohydrate or intravenous glucose, and prevention relies on frequent complex-carbohydrate feeds and uncooked cornstarch. In GSD I a glucagon test can even provoke acidosis.
Which GSD is X-linked?
GSD type IX, caused by phosphorylase kinase deficiency, shows X-linked inheritance in the liver form IXa (PHKA2), with hepatomegaly, growth retardation and motor delay. Most other glycogen storage diseases, including types I to VII, are autosomal recessive. Type IX is also described as the most common GSD subtype.

Sources

  1. GeneReviews - Classic Galactosemia and Clinical Variant Galactosemia (NCBI Bookshelf)
  2. StatPearls - Glycogen Storage Disease (NCBI Bookshelf, updated January 2025)
  3. StatPearls - Glycogen Storage Disease Type I (NCBI Bookshelf)
  4. StatPearls - McArdle Disease (Glycogen Storage Disease Type 5) (NCBI Bookshelf)
  5. Mishra et al. - Mitochondrial Dysfunction in Glycogen Storage Disorders (Biomolecules 2024), Table 1 enzyme defects and clinical features

For exam preparation and education only — not a substitute for clinical judgement or local guidelines. How we write and review these pages: editorial policy.

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