Corneal Ulcer and Keratoplasty — Causative Organisms, Treatment, Graft Types and Rejection

Written & medically reviewed by the Kinase Medical Team · Last reviewed

Quick Answer

A corneal ulcer is infective keratitis, most often bacterial (Staphylococcus, Pseudomonas, Streptococcus pneumoniae), fungal (Aspergillus, Fusarium; natamycin) or Acanthamoeba in contact-lens wearers (PHMB, chlorhexidine). Scraping for smear and culture guides therapy. Non-healing or perforated ulcers need therapeutic keratoplasty, while PKP, DALK and endothelial keratoplasty restore vision.

What is a corneal ulcer and what are the causes?

A corneal ulcer (microbial keratitis) is an infection of the corneal tissue in which the epithelium is breached and the stroma becomes infiltrated and necrotic. Bacteria, fungi, protozoa and viruses can all invade, but bacteria are the most feared because they cause rapidly progressive, vision-threatening keratitis. The eye is normally protected by anatomical barriers (bony orbital rim, lids, intact epithelium), mechanical barriers (tear film, lacrimal drainage) and antimicrobial tear components (IgA, lysozyme, lactoferrin, complement). When these fail, infection follows.

  • Contact lens wear — a major cause: overnight wear, poor hygiene, tap-water rinse, sharing, swimming with lenses.
  • Trauma and foreign body, chemical injury, previous ocular surgery, and drugs such as topical corticosteroids.
  • Local disease: dry eye, trichiasis, blepharitis, chronic dacryocystitis, lagophthalmos, neurotrophic keratopathy, bullous keratopathy, recurrent erosions, prior viral keratitis.
  • Systemic: diabetes, malnutrition, xerophthalmia, immunosuppression, Stevens–Johnson syndrome, facial and trigeminal nerve palsy, alcoholism.
Keratitis - Bacterial and FungalHospital teaching clip on bacterial and fungal keratitis: how the ulcers look and how they are managed.Video: Wills Eye Hospital · 3:50 · Watch on YouTube · Loads from YouTube (privacy-enhanced mode) only when you press play.

Where the cornea sits. The wall of the eyeball has three coats: the fibrous tunic (outermost), the vascular tunic (uvea) and the retina. The fibrous tunic is the transparent cornea in front and the opaque sclera behind. The corneal surface is non-keratinised stratified squamous epithelium, the middle coat is collagen with fibroblasts, and the inner surface is a simple (squamous) endothelial layer — which is why an ulcer that breaks the epithelium exposes the stroma.

What are the features of a bacterial corneal ulcer?

The most common species are Staphylococcus aureus, S. epidermidis, Streptococcus pneumoniae, Pseudomonas aeruginosa and Enterobacteriaceae. Symptoms are pain, redness, watering, purulent discharge, photophobia and reduced vision. The ulcer passes through four stages: progressive infiltration, active ulceration, regression and cicatrisation.

Organism and the clue it gives
OrganismCharacteristic feature
*Pseudomonas aeruginosa*Greenish-yellow discharge, rapid stromal melt, ring infiltrate, hypopyon, ground-glass cornea; early descemetocele or perforation
*Streptococcus pneumoniae*Central deep oval ulcer with a progressive (undermined) edge; hypopyon ulcer = ulcus serpens; source is often chronic dacryocystitis
Staphylococcus aureusOval yellowish-white stromal abscess, in compromised corneas (bullous keratopathy, dry eye, rosacea); biofilm on contact lenses
MoraxellaIndolent paracentral oval ulcer with undermined necrotic edge in debilitated, alcoholic or diabetic patients
NocardiaWreath-like (necklace) pinhead infiltrates after soil trauma
Non-tuberculous mycobacteriaSlowly progressive, crack-windshield radiating infiltrate, after LASIK or contaminated instruments
N. gonorrhoeaeHyperpurulent conjunctivitis with rapid stromal infiltration
Slit-lamp close-up of an eye with a hazy white cornea and a flat, pale yellow layer of pus settled at the bottom of the front chamber, in front of a red iris.
Hypopyon: a level of pus in the anterior chamber, seen here below a clouded cornea. In a bacterial ulcer it is sterile, formed by leucocytes released from an inflamed iris and ciliary body rather than by bacteria.Image: Imrankabirhossain, CC BY-SA 4.0

How does fungal keratitis differ, and what is the treatment?

Fungal keratitis accounts for 40–50% of microbial keratitis in some series and is typically linked to trauma with vegetative matter (farmers, field work), contact lenses, ocular surface disease and topical steroids. Of the 100+ implicated species, Fusarium, Aspergillus and Candida are the commonest; in India Aspergillus was the most commonly isolated species in several studies (one showed more than 55%), followed by Fusarium. Fusarium is more linked to trauma and contact lenses; Candida to ocular surface disease and steroids.

Bacterial vs fungal ulcer
FeatureBacterialFungal
HistoryContact lens, traumaVegetative or soil trauma, farming
UlcerSuppurative, yellow-white, sloughing edgeRaised firm slough, feathery margins, satellite lesions, hyphae beyond the ulcer
EndotheliumPlaque in severe casesEndothelial plaque; fungus can breach Descemet membrane
Quick stainGram stain10% KOH (sensitivity over 90%), calcofluor white
DrugFortified cephalosporin + aminoglycoside, or fluoroquinoloneNatamycin 5% for filamentous fungi; amphotericin B for yeasts

Topical antifungals: natamycin 5% is the first treatment of choice for filamentous fungi; amphotericin B 0.15–0.3% is preferred for yeasts (Candida); voriconazole 1% penetrates better and can be given intrastromally or intracamerally; others are econazole, itraconazole and miconazole. All antifungals are largely fungistatic, so treatment is prolonged and dosing is hourly in the first 48 hours before tapering. Because drugs penetrate poorly, regular scraping of necrotic slough improves penetration. KOH smear is fast and highly sensitive; Gram and Giemsa are about 50% sensitive; cultures (Sabouraud agar) may take days to weeks.

What are Acanthamoeba keratitis and herpetic keratitis?

Acanthamoeba keratitis is a protozoal infection seen in contact-lens wearers (tap-water exposure, swimming, poor lens hygiene). It is intensely painful because the organism damages corneal nerves, producing radial keratoneuritis; late disease shows a ring-like stromal infiltrate (about 50% of advanced cases). It is frequently misdiagnosed — 75–90% of cases, mostly as herpetic keratitis (about 48%) or fungal keratitis (about 25%). Diagnosis uses scraping: calcofluor white (cysts as light-green double-walled structures) or Gram stain, culture on non-nutrient agar overlaid with *E. coli*, PCR and confocal microscopy. The cyst form is resistant to most drugs; first-line treatment is a biguanide (PHMB 0.02% or chlorhexidine 0.02%, escalated if unresponsive) with or without a diamidine.

Blue-lit slit-lamp view of a cornea stained with fluorescein, showing a thin, green, branching, tree-like ulcer in the upper part of the cornea.
Dendritic ulcer of herpes simplex keratitis, stained with fluorescein: a branching epithelial defect with bulb-like ends. Geographic ulcers are larger variants of the same process.Image: Imrankabirhossain, CC BY-SA 4.0

Herpes simplex keratitis follows reactivation of latent HSV. Presentations are dendritic ulcers, geographic ulcers, stromal keratitis, disciform keratitis and neurotrophic keratopathy; stromal keratitis is the most common and is largely immune-mediated. HSV epithelial keratitis starts as small dot-like lesions that merge into branched dendrites, which may enlarge into geographic ulcers. Reduced corneal sensation, scarring and blindness are the complications. For epithelial keratitis use acyclovir 3% ointment or ganciclovir 0.15% gel five times daily; trifluridine can also be used. About 99% of ulcers heal within 2 weeks.

How is a corneal ulcer investigated?

Corneal scraping from the margin and base of the ulcer is the key investigation. Indications are a large central infiltrate with stromal involvement or melt, a chronic ulcer unresponsive to broad-spectrum antibiotics, previous corneal surgery, atypical features and multiple infiltrates. It is done under topical anaesthesia — preservative-free proparacaine is preferred, as preservatives reduce bacterial viability — using a Bard-Parker no. 11 or 15 blade, a 26 G needle or a sterile spatula. Smears go for Gram stain (and KOH/calcofluor/acid-fast as needed); scrapings are inoculated onto culture media. Smear results are available within about an hour; culture in 48–72 hours.

Stains and media
OrganismStain / medium
BacteriaGram stain; blood agar (aerobes), thioglycolate broth
Neisseria, Moraxella, HaemophilusChocolate agar; Thayer–Martin agar for Neisseria
MycobacteriumAcid-fast stain (pink); Löwenstein–Jensen medium
Fungi10% KOH, calcofluor white, Giemsa, PAS, GMS; Sabouraud agar
AcanthamoebaCalcofluor white; non-nutrient agar with E. coli

Other tests: contact lens and solution cultures (if not cleaned), conjunctival swab on calcium alginate, corneal biopsy when two smears and cultures are negative and the ulcer progresses, anterior chamber paracentesis when cultures are negative, B-scan ultrasound when corneal haze or exudate prevents a fundus view (for example after therapeutic keratoplasty), and PCR/confocal microscopy in selected cases. Revise stains and culture media for the microbiology link.

How is a bacterial corneal ulcer treated and what are the complications?

Start broad-spectrum antibiotics covering Gram-positive and Gram-negative bacteria once the smear is taken, then switch to targeted therapy when culture is back. Peripheral ulcers below 3 mm outside the visual axis may be treated with monotherapy; larger, deep stromal ulcers need two drugs. Drugs: fortified cefazolin 5% (Gram-positives), fortified tobramycin 0.3% or gentamicin (Gram-negatives), fortified vancomycin 5% (MRSA), and fluoroquinolones (ciprofloxacin, ofloxacin, moxifloxacin, gatifloxacin) as monotherapy — moxifloxacin and gatifloxacin are now favoured because resistance to ciprofloxacin and ofloxacin is growing.

  • Cycloplegics reduce ciliary spasm, pain and synechiae; timolol 0.5% is the safest antiglaucoma drug if pressure is raised. Miotics and prostaglandin analogues should be avoided because they aggravate inflammation.
  • Systemic antibiotics have a limited role — scleritis, endophthalmitis or non-resolving ulcers.
  • Supportive: lubricants, analgesia, dark goggles, avoid rubbing and water splash.
Complications and their management
ComplicationWhat happensTreatment
DescemetoceleUlcer reaches Descemet membrane, which resists and bulges outAvoid coughing and straining, which can perforate it; glue plus bandage lens for impending perforation
PerforationAqueous gushes out, pain relieved; small perforation plugged by iris → adherent leucomaCyanoacrylate glue + bandage contact lens, amniotic membrane graft; larger than 2 mm needs keratoplasty; Gunderson conjunctival flap if no donor cornea
Anterior staphylomaWhole cornea sloughs; a thin pseudocornea cannot withstand pressure and bulges with plastered irisPartial or total ectatic scar; late complication
Non-healing ulcer (2 weeks)Persistent infectionTherapeutic penetrating keratoplasty (TPK)
ScarringNebular, macular, leucomatous opacity by depthOptical keratoplasty after the eye has been quiet for several months

What are the types of keratoplasty and which is used when?

Keratoplasty replaces diseased cornea with donor tissue. Penetrating keratoplasty (PKP) is full thickness (all five corneal layers). Lamellar techniques replace only the diseased layer: DALK (deep anterior lamellar keratoplasty) replaces epithelium, Bowman layer and stroma while keeping the host endothelium; endothelial keratoplasty (DSEK/DSAEK, DMEK) replaces only endothelium with Descemet membrane (plus a thin stromal layer in DSAEK). Lamellar surgery is now preferred over PKP for many indications because it gives better outcomes and fewer complications.

Keratoplasty types
ProcedureLayers replacedTypical indication
PKP (penetrating)Full thicknessScars, advanced keratoconus, dystrophies, therapeutic use in infection
DALKEpithelium, Bowman layer, stroma; host Descemet and endothelium keptKeratoconus and anterior stromal disease
DSEK / DSAEKEndothelium + Descemet + thin posterior stroma (automated with microtome in DSAEK)Fuchs dystrophy, pseudophakic bullous keratopathy
DMEKEndothelium + Descemet membrane onlyEndothelial failure; rejection about 1.9% on average in an AAO review
Tectonic / therapeutic / optical / cosmeticPKP aim: restore globe integrity / remove infection / restore vision / improve appearancePerforation / non-healing ulcer / scar / opacity
Close-up of a brown iris and black pupil with a faint circular line in the cornea marking the edge of a graft and a few fine dark sutures radiating around the margin.
A penetrating keratoplasty one year after surgery: the circular graft–host junction and the fine interrupted sutures that hold the donor button in place are visible at the corneal margin.Image: DEXi, CC0
Types of Corneal Transplant: DALK vs DSEK vs PK ExplainedShort animated comparison of DALK, DSEK and penetrating keratoplasty and when each is chosen.Video: EyeMantra Hospital · 3:51 · Watch on YouTube · Loads from YouTube (privacy-enhanced mode) only when you press play.

Prognosis by indication (PKP): excellent (over 90% success) for keratoconus, lattice and granular dystrophy and early Fuchs; very good (80–90%) for pseudophakic and aphakic bullous keratopathy and herpetic keratitis; fair (50–80%) for active keratitis and perforation; poor (below 50%) for ocular pemphigoid, Stevens–Johnson syndrome, neurotrophic keratitis and multiple graft failures. Therapeutic PKP for an infected ulcer uses a graft about 0.5 mm larger than the host bed; optical PKP is done after the infection has been quiet for 6–8 months. Contraindications include severe dry eye, SJS/TEN, advanced ocular surface disease and vascularisation in more than two quadrants.

What do you need to know about donor cornea and graft rejection?

The cornea is immune privileged: it has no blood vessels, no lymphatics, and anterior chamber–associated immune deviation (ACAID), which explains the high success of grafts. Donor corneas are enucleated within about 6 hours of death; a donor endothelial cell count of at least 2000 cells/mm² is required, and storage media range from a moist chamber (48 hours) and M-K medium (up to 4 days) to organ culture (35 days) and cryopreservation (up to a year).

Graft rejection and failure
TermMeaning
Primary graft failureCorneal oedema from the first postoperative day (poor tissue, surgical trauma)
Graft rejectionImmune response to donor tissue, diagnosed only when the graft has been clear for at least 2 weeks; about 18–21% of graft recipients have a rejection episode
TypesEpithelial, subepithelial, stromal and endothelial (the commonest); the Khodadoust line is the endothelial rejection line; keratic precipitates, oedema and neovascularisation also occur
High-risk hostTwo or more quadrants of deep vascularisation, previous rejected graft, inflamed eye, glaucoma or ocular surface disease
TreatmentIntensive topical corticosteroid (e.g. dexamethasone 0.1%) reverses most endothelial rejection; systemic steroid in selected cases

Frequently asked questions

What are the commonest causes of bacterial corneal ulcer?
Staphylococcus aureus, Staphylococcus epidermidis, Streptococcus pneumoniae, Pseudomonas aeruginosa and members of the Enterobacteriaceae are the species most commonly isolated. Contact lens wear, trauma, chronic dacryocystitis, dry eye, diabetes and previous viral keratitis are the main predisposing factors. Pseudomonas and pneumococcus are the most dangerous because of their virulence and rapid corneal destruction.
What is ulcus serpens?
Ulcus serpens is the characteristic hypopyon corneal ulcer caused by Streptococcus pneumoniae. It is a deep, central oval ulcer with one progressive, undermined edge while the other edge heals. The most common source of the infection is chronic dacryocystitis, so lacrimal sac pathology should always be looked for and treated.
What is the drug of choice for fungal corneal ulcer?
Natamycin 5% is the first treatment of choice for filamentous fungal keratitis, usually Fusarium or Aspergillus, and amphotericin B 0.15–0.3% is preferred for yeasts such as Candida. Voriconazole 1% penetrates the cornea better and can be injected intrastromally. These drugs are mostly fungistatic, so therapy is prolonged, starting hourly for the first 48 hours.
How is Acanthamoeba keratitis treated?
First-line treatment is topical biguanides, polyhexamethylene biguanide (PHMB) starting at 0.02% or chlorhexidine 0.02%, with or without a diamidine, because they kill the resistant cyst form. Concentrations can be increased in severe or unresponsive disease. Clues are a contact lens user with severe pain out of proportion to signs, radial keratoneuritis and a ring infiltrate.
What is the first investigation in a corneal ulcer?
Corneal scraping from the ulcer margin and base, taken under preservative-free topical anaesthesia, for smear and culture. Gram stain gives results within an hour and guides empirical therapy; 10% KOH or calcofluor white is used for fungi. Culture on blood and chocolate agar, and Sabouraud agar for fungi, confirms the organism and sensitivities.
When is therapeutic keratoplasty indicated in a corneal ulcer?
Therapeutic penetrating keratoplasty is the treatment of choice for a non-healing infective ulcer, in practice one that fails medical therapy for about two weeks, and for large perforations above 2 mm. It removes the infective focus and restores globe integrity. Smaller perforations may be sealed with cyanoacrylate glue and a bandage contact lens, or an amniotic membrane graft.
What is the difference between PKP, DALK and DMEK?
Penetrating keratoplasty replaces the full thickness of the cornea. DALK replaces the epithelium, Bowman layer and stroma but keeps the patient's own endothelium, so it is used for conditions such as keratoconus. DMEK replaces only the endothelium and Descemet membrane, for endothelial failure. Selective lamellar techniques have fewer complications and lower rejection rates.
Which type of corneal graft rejection is most common and how is it treated?
Endothelial rejection is the commonest type, and its sign is the Khodadoust line with keratic precipitates and corneal oedema. Rejection is diagnosed only if the graft has been clear for at least two weeks. Intensive topical corticosteroid such as dexamethasone 0.1% reverses most episodes; delay in recognition is the main reason treatment fails.

Sources

  1. StatPearls — Anatomy, Head and Neck, Eye (NBK482428)
  2. StatPearls — Bacterial Keratitis (NCBI Bookshelf)
  3. StatPearls — Fungal Keratitis (NCBI Bookshelf)
  4. StatPearls — Acanthamoeba Keratitis (NCBI Bookshelf)
  5. StatPearls — Herpes Simplex Keratitis (NCBI Bookshelf)
  6. StatPearls — Penetrating Keratoplasty (NCBI Bookshelf)
  7. StatPearls — Cornea Transplantation (NCBI Bookshelf)
  8. StatPearls — Corneal Graft Rejection (NCBI Bookshelf)

For exam preparation and education only — not a substitute for clinical judgement or local guidelines. How we write and review these pages: editorial policy.

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