Development of the Heart — Heart Tube, Looping, Septation and the Defects That Follow

Written & medically reviewed by the Kinase Medical Team · Last reviewed

Quick Answer

The heart develops from the cardiogenic area of splanchnic mesoderm. Paired endocardial tubes fuse around day 21 to 22 into a heart tube with five regions (truncus arteriosus, bulbus cordis, ventricle, atrium, sinus venosus), which loops to the right by day 28. Septa form between days 27 and 37 from endocardial cushions and the septum primum and secundum.

How does the heart tube form and what does each part become?

The heart is the first functional organ to develop, because the growing embryo's metabolic needs soon exceed what diffusion can supply. Cardiac progenitor cells in the splanchnic (visceral) layer of lateral plate mesoderm coalesce into the cardiogenic field (a horseshoe-shaped region), and blood islands form vessels. Two endocardial tubes form on either side; with lateral folding of the embryo they fuse in the midline around day 22 into a single primitive heart tube, which begins to pump around day 23 and beats by the 4th week.

The tube has three layers: the endocardium (endothelial lining), a layer of cardiac jelly, and the myocardium with the visceral epicardium outside. Blood enters through the cardinal, umbilical and vitelline veins at the caudal end and leaves through the aortic arches to the dorsal aortae.

Early Fetal Development of the Heart | EmbryologyEarly development of the heart: cardiogenic field, heart tube and looping.Video: Lecturio Medical · 9:23 · Watch on YouTube · Loads from YouTube (privacy-enhanced mode) only when you press play.
Stages of heart development: cardiogenic area at 18 days, paired endocardial tubes at 20 days, fusion at 21 days, then a tube labelled truncus arteriosus, bulbus cordis, primitive ventricle and primitive atrium at 22 days, looping at 23 to 35 days, and partitioning into four chambers at 28 days and 8 weeks.
From paired endocardial tubes to a looped four-chambered heart. The tube is labelled from head to tail: truncus arteriosus, bulbus cordis, ventricle, atrium, sinus venosus.Image: OpenStax College, CC BY 3.0
Primitive heart tube parts (cranial to caudal) and their derivatives
Embryonic partAdult derivative
Truncus arteriosusProximal (ascending) aorta and pulmonary trunk
Bulbus cordis — conus cordisSmooth-walled outflow portions of the right and left ventricles
Bulbus cordis — proximal partTrabeculated part of the right ventricle
Primitive ventricleLeft ventricle (trabeculated part)
Primitive atriumTrabeculated parts of the atria (auricles / atrial appendages); the smooth part of the left atrium comes from the pulmonary vein
Sinus venosus (right and left horns)Right and left horns mature into the right atrium (smooth-walled sinus venarum from the right horn), the venae cavae and the coronary sinus; incorporation into the right atrium gives the SA node

What is cardiac looping and why does it matter?

Around day 22–23 the heart tube elongates and bends into a cardiac loop: the cranial (bulboventricular) part bends ventrocaudally and to the right, and the caudal (atrial) part moves dorsocranially and to the left. Looping takes about five days and is complete by about day 28. After looping the bulbus cordis lies on the right and the primitive ventricle on the left, and the atria and sinus venosus lie dorsal to the ventricles — the pattern of the adult heart.

  • Left–right axis: motile cilia in the primitive node beat clockwise to create a leftward flow; NODAL then induces LEFTY and PITX2, the key gene for left–right orientation.
  • Dextrocardia: failure of this process (for example dynein defects) puts the heart on the right; it is seen in Kartagener syndrome.
  • PITX2 mutations are also linked to ASD, VSD and tetralogy of Fallot.
  • Other genes: TBX5 (Holt-Oram syndrome — ASD in about 58% and VSD in 28%, with upper-limb defects), NKX2-5 and GATA4 (atrial septation), NOTCH pathway.

How do the atria become separated?

The major septa form between days 27 and 37 by fusion of tissue masses called endocardial cushions. Atrial septation follows a fixed sequence; the exam favourites are the names of the two septa and the two openings.

  1. By the end of week 4 a sickle-shaped septum primum grows down from the roof of the common atrium toward the endocardial cushions, leaving the ostium primum.
  2. The septum primum fuses with the cushions, closing the ostium primum. Apoptosis creates perforations in the upper septum primum that coalesce into the ostium secundum, so right-to-left flow continues.
  3. A second, thicker, crescent-shaped fold, the septum secundum, grows to the right of the septum primum but never completely partitions the atrium; its free edge leaves the foramen ovale.
  4. The lower part of the septum primum persists as the valve of the foramen ovale.
  5. At birth, the first breath increases pulmonary blood flow and left atrial pressure, pressing the valve against the septum secundum and functionally closing the foramen ovale.
Labelled drawing of the heart in section with the right atrium, left atrium and ventricles; septum primum in blue and septum secundum in green overlap, with the foramen secundum and foramen ovale marked and an arrow showing blood passing from right to left.
The septum primum (blue) and septum secundum (green) overlap so that blood can flow from the right to the left atrium through the foramen ovale before birth.Image: Yahia.Mokhtar, CC BY-SA 4.0
Formation of the Right and Left Atria: Ostium Secundum & Foramen Ovale – Embryology | LecturioHow the atria separate: septum primum, ostium secundum and foramen ovale.Video: Lecturio Medical · 13:15 · Watch on YouTube · Loads from YouTube (privacy-enhanced mode) only when you press play.
Types of atrial septal defect (most to least frequent)
TypeCause / feature
Patent foramen ovaleCommonest; persistent communication through the foramen ovale
Ostium secundum ASDInsufficient septum secundum or excessive resorption of septum primum
Ostium primum ASDEndocardial cushion defect (part of AV septal defect); strong link to trisomy 21
Sinus venosus ASDRarer type
Coronary sinus ASDRarest type

How do the AV canals, valves and ventricular septum form?

By the end of week 4 the atrioventricular canal has superior and inferior (dorsal and ventral) endocardial cushions plus two lateral cushions. The superior and inferior cushions fuse and divide the canal into right and left AV orifices; mesenchyme around each orifice thins to form the AV valves (tricuspid and mitral), tethered to papillary muscles by chordae tendineae. The cross-like appearance of the fused cushions and septa on fetal ultrasound is used to confirm cardiac integrity.

  • Muscular interventricular septum: the medial walls of the expanding ventricles come together and merge.
  • Membranous interventricular septum: forms when the interventricular foramen is closed by tissue growing from the endocardial cushions.
  • Complete AV septal defect (AVSD): cushions fail to fuse with the atrial and ventricular septa — an ASD, a VSD and a common AV valve. AVSDs are about 4–5% of congenital heart defects and are strongly associated with trisomy 21.

VSD is the commonest congenital cardiac anomaly in children. The perimembranous (membranous) VSD is the commonest type, about 80% of all VSDs; the rest are muscular, inlet and outlet types. Many close spontaneously.

How is the outflow tract divided into aorta and pulmonary trunk?

In week 5 truncal swellings (ridges) appear in the truncus arteriosus and conus swellings in the conus cordis. The right superior truncal swelling grows leftward and the left inferior swelling rightward; they twist around each other and fuse into the aorticopulmonary (conotruncal) septum, which therefore spirals. It divides the truncus into an aortic channel and a pulmonary channel, and the conus into an anterolateral part (right ventricular outflow) and a posteromedial part (left ventricular outflow). The semilunar valves form from tubercles on the truncal swellings.

Conotruncal malformations
DefectEmbryological errorKey facts
d-Transposition of the great arteriesConotruncal septum forms linearly instead of spirallingAorta from the right ventricle, pulmonary trunk from the left ventricle; two parallel circulations; fatal in infancy without intervention
Persistent truncus arteriosusAbsent or partial aorticopulmonary septumSingle arterial trunk, single truncal valve and a VSD; associated with 22q11.2 deletion (DiGeorge) in 12–35%
Tetralogy of Fallot, double-outlet RVAbnormal conotruncal / neural crest developmentSee tetralogy of Fallot and cyanotic CHD

What happens at the venous end, and where do the conduction tissues come from?

  • Sinus venosus: its right horn is absorbed into the right atrium, forming the smooth sinus venarum. The horns also contribute to the venae cavae and coronary sinus.
  • Pulmonary vein: a single embryonic pulmonary vein joins the left atrium and its branches are incorporated, forming the smooth-walled posterior left atrium. The trabeculated left auricle is the old primitive atrium.
  • Pacemaker: initially in the caudal part of the heart tube, later taken over by the sinus venosus; its incorporation into the right atrium gives the SA node.
  • Ductus arteriosus is kept open by prostaglandins; premature closure can follow NSAID exposure. Its remnant is the ligamentum arteriosum. See fetal circulation.

Most congenital heart defects arise from genetic mutations that disrupt cardiac development; teratogens such as rubella and alcohol also contribute, and lithium is linked to Ebstein anomaly.

How is heart development asked in NEET PG and INI-CET?

  • Derivatives: bulbus cordis → trabeculated right ventricle; primitive ventricle → left ventricle; sinus venosus right horn → sinus venarum; truncus → ascending aorta and pulmonary trunk.
  • Timing: tubes fuse ~day 22; beat ~day 23; looping complete by day 28; septation days 27–37.
  • Septum identification: valve of foramen ovale = septum primum; crescentic fold = septum secundum.
  • Defect-embryology matching: TGA (linear septum), truncus (absent septum), AVSD (cushion fusion failure, trisomy 21), ostium primum.
  • Gene matching: PITX2 (laterality), TBX5 (Holt-Oram), NKX2-5, 22q11.2 (conotruncal).

Frequently asked questions

What does each part of the primitive heart tube become?
The truncus arteriosus forms the ascending aorta and pulmonary trunk. The bulbus cordis forms the trabeculated right ventricle and, through its conus cordis, the smooth outflow tracts. The primitive ventricle forms the left ventricle, the primitive atrium forms the trabeculated atria, and the sinus venosus forms the sinus venarum, coronary sinus and SA node.
When does the heart start beating in the embryo?
The paired endocardial tubes fuse into a single heart tube around day 22, and the heart begins to pump about day 23, so it is beating by the fourth week of development. Looping is complete by about day 28 and the major septa form between days 27 and 37. It is the first functional organ.
What is the difference between septum primum and septum secundum?
The septum primum grows down from the roof of the common atrium first; apoptosis in it creates the ostium secundum, and its lower remnant becomes the valve of the foramen ovale. The septum secundum is a thicker, crescent-shaped fold that grows to its right and leaves the foramen ovale. Neither completely partitions the atrium before birth.
How does the foramen ovale close after birth?
With the first breath, pulmonary blood flow rises and so does left atrial pressure. This presses the valve of the foramen ovale, the remnant of the septum primum, against the septum secundum and closes the opening functionally. If it fails to seal, a patent foramen ovale remains, which can allow paradoxical emboli.
What causes transposition of the great arteries?
In dextro-transposition the conotruncal septum forms in a straight line instead of spiralling, so the aorta arises from the right ventricle and the pulmonary trunk from the left ventricle. This creates two parallel circulations and infants die within months without intervention. Neural crest migration failure is the underlying embryological problem.
What is the commonest type of ventricular septal defect?
The perimembranous VSD, located in the membranous septum below the crista supraventricularis, accounts for about 80% of VSDs. It arises when the membranous septum fails to close from endocardial cushion tissue. Congenital VSD is the commonest cardiac anomaly in children, and many small defects close spontaneously.
Which gene determines left-right orientation of the heart?
PITX2 is considered the primary gene for left-right orientation. Motile cilia in the primitive node create leftward flow, NODAL expression then induces LEFTY and PITX2. Failure of this process, for example dynein defects as in Kartagener syndrome, leads to dextrocardia. PITX2 mutations are also linked to ASD, VSD and tetralogy of Fallot.
Which defect is linked to endocardial cushion failure and Down syndrome?
Atrioventricular septal defect, also called atrioventricular canal defect. The endocardial cushions fail to fuse with the atrial and ventricular septa, so a complete defect has an atrial septal defect, a ventricular septal defect and a common AV valve. AVSDs are strongly associated with trisomy 21 and account for 4 to 5% of congenital heart defects.

Sources

  1. StatPearls — Embryology, Heart (NCBI Bookshelf)
  2. StatPearls — Embryology, Heart Tube (NCBI Bookshelf)
  3. StatPearls — Embryology, Atrioventricular Septum (NCBI Bookshelf)
  4. StatPearls — Atrial Septal Defect (NCBI Bookshelf)
  5. StatPearls — Ventricular Septal Defect (NCBI Bookshelf)
  6. StatPearls — Truncus Arteriosus (NCBI Bookshelf)
  7. StatPearls — Transposition of the Great Arteries (NCBI Bookshelf)

For exam preparation and education only — not a substitute for clinical judgement or local guidelines. How we write and review these pages: editorial policy.

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