Pseudomembranous Colitis — Clostridioides difficile Toxins, Diagnosis, Severity and Treatment

Written & medically reviewed by the Kinase Medical Team · Last reviewed

Quick Answer

Pseudomembranous colitis is severe colonic inflammation caused by toxin-producing Clostridioides difficile, a gram-positive, spore-forming anaerobe, usually after broad-spectrum antibiotics. Toxin A (enterotoxin) and toxin B (cytotoxin) draw in neutrophils, forming yellowish plaques. Diagnosis uses stool GDH or NAAT plus toxin testing; current guidelines prefer fidaxomicin, with oral vancomycin as an alternative.

What is pseudomembranous colitis?

Pseudomembranous colitis is the severe end of Clostridioides difficile infection (CDI). StatPearls describes it as a severe inflammation of the inner lining of the large intestine that appears as an antibiotic-associated colonic inflammatory complication. The organism — formerly called Clostridium difficile — is a gram-positive, anaerobic, spore-forming, toxin-producing bacillus and a major cause of antibiotic-associated colitis worldwide.

The clinical spectrum is wide: asymptomatic carriage → mild diarrhoea → pseudomembranous colitis → toxic megacolon with septic shock. Not every C. difficile infection shows pseudomembranes, but when they are seen on endoscopy in a patient with diarrhoea they are strongly suggestive of the diagnosis.

Understanding Clostridium Difficile Infection (C. Diff)Short overview of C. difficile — risk factors, presentation, testing and treatment.Video: Zero To Finals · 6:18 · Watch on YouTube · Loads from YouTube (privacy-enhanced mode) only when you press play.
Colonoscopy view of the colon lumen with many raised yellowish plaques scattered over reddened mucosa.
Colonoscopy in pseudomembranous colitis: raised yellowish plaques (pseudomembranes) on inflamed mucosa. Seen in a patient with diarrhoea, they strongly suggest C. difficile infection.Image: Samir, CC BY 3.0

How do C. difficile toxins A and B cause colitis?

Diarrhoea and pseudomembranous colitis result from two clostridial glycosylating exotoxins: toxin A (TcdA), an enterotoxin, and toxin B (TcdB), a cytotoxin. The organism itself does not invade the mucosa; the damage is toxin-driven.

  1. Antibiotics disturb the normal colonic microbiota.
  2. Spores picked up from hands, surfaces or equipment reach the colon, where toxigenic strains multiply.
  3. Toxins A and B damage the colonic epithelium.
  4. The toxins over-stimulate the innate immune system and draw neutrophils into the colonic mucosa — the basis of the pseudomembrane.

On colonoscopy the mucosa is inflamed with raised yellowish, occasionally haemorrhagic nodules or plaques that join into pseudomembranes. These plaques are up to about 2 cm across and are scattered among areas of normal mucosa; in the most severe cases confluent pseudomembranes cover the whole colonic surface.

Toxins and virulence factors
FactorNatureExam point
Toxin A (TcdA)EnterotoxinFluid secretion, mucosal inflammation
Toxin B (TcdB)CytotoxinCytopathic effect — the basis of the old cell-culture cytotoxicity assay
Binary toxin (CDT)Extra toxin of the hypervirulent strainSeen with NAP1/BI/027
SporesResistant resting formSurvive alcohol hand rubs and persist on surfaces
Opened segment of colon on a blue background with a scale bar, its lining almost completely covered by greenish-yellow patches of exudate.
Resected colon in severe disease: the plaques have joined into near-confluent pseudomembranes covering the mucosal surface, the most severe end of the spectrum.Image: Narraburra, CC0
Low-power H&E micrograph of colonic mucosa with a pale pink mushroom-shaped cap of exudate spreading over the surface from a damaged area of the mucosa.
Microscopy of a pseudomembrane: inflammatory exudate erupts from injured surface mucosa and spreads over it, the plaque seen at colonoscopy.Image: Ed Uthman from Houston, TX, USA, CC BY 2.0

Which antibiotics and risk factors cause C. difficile infection?

The most significant risk factor is antibiotic use, particularly broad-spectrum antibiotics. StatPearls names penicillins, cephalosporins, fluoroquinolones and clindamycin as the classes most associated with the disease — but any antibiotic can lead to CDI.

Risk factors for C. difficile infection (StatPearls)
GroupExamples
AntibioticsClindamycin, cephalosporins, fluoroquinolones, penicillins — any antibiotic possible
Acid suppressionProton pump inhibitors
Host factorsAdvanced age, immunosuppression, comorbidities, kidney or liver failure
Healthcare exposureRecent hospitalisation, prolonged hospital stay
HistoryPrevious C. difficile infection

How does C. difficile colitis present and how is severity graded?

The usual picture is watery diarrhoea during or after a course of antibiotics, often with crampy abdominal pain, fever and leukocytosis. IDSA/SHEA 2017 defines the patients who should be tested as those with unexplained, new-onset ≥ 3 unformed stools in 24 hours.

IDSA/SHEA 2017 severity definitions for an initial episode
SeveritySupportive data
Non-severeWBC ≤ 15,000 cells/µL and serum creatinine < 1.5 mg/dL
SevereWBC ≥ 15,000 cells/µL or serum creatinine > 1.5 mg/dL
FulminantHypotension or shock, ileus or megacolon (previously called 'severe, complicated')

How is C. difficile infection diagnosed?

Diagnosis is made on stool from a patient with clinically significant diarrhoea. The available tests detect the organism (glutamate dehydrogenase [GDH] antigen, nucleic acid amplification tests [NAAT] for toxin genes) or the free toxin (toxin A/B enzyme immunoassay, cell cytotoxicity neutralisation assay).

Stool tests for C. difficile
TestDetectsStrengthWeakness
GDH antigen EIAConserved enzyme (common antigen) present in all isolatesGood screenPresent in toxigenic and non-toxigenic strains — must be paired with a toxin test
NAAT (PCR)Toxin genes (e.g. tcdA, tcdB)Most sensitiveShows the gene, not toxin being made now
Toxin A/B EIAFree toxin in stoolSpecific for active diseaseLess sensitive alone
Cell cytotoxicity neutralisation assayToxin activity on cultured cellsDetects active toxinLaboratory-based, slower

IDSA/SHEA 2017 recommends a multistep algorithm — GDH plus toxin; GDH plus toxin, arbitrated by NAAT; or NAAT plus toxin — rather than a toxin test alone. When there are agreed institutional criteria for which stools are sent, NAAT alone or a multistep algorithm can be used.

  • Do not repeat testing within 7 days during the same episode of diarrhoea.
  • Do not test asymptomatic patients and do not do a 'test of cure'.
  • Do not routinely test neonates or infants ≤ 12 months — neonates have a high asymptomatic carrier rate.
  • Colonoscopy/sigmoidoscopy showing pseudomembranes supports the diagnosis when tests are negative but suspicion remains, or treatment fails.
Gram-stained stool smear showing clusters of purple-stained rod-shaped bacteria among other faecal material.
Gram stain of a stool sample with purple (gram-positive) rods of C. difficile. The organism is a gram-positive, spore-forming bacillus, but diagnosis rests on stool GDH or NAAT plus a toxin test, not on a smear.Image: ItsHong, CC BY-SA 4.0
Testing for Clostridium difficile InfectionCDC presentation on laboratory testing for C. difficile infection - the stool tests available and how to interpret them.Video: Centers for Disease Control and Prevention (CDC) · 6:04 · Watch on YouTube · Loads from YouTube (privacy-enhanced mode) only when you press play.

What is the treatment of C. difficile colitis?

First stop the inciting antibiotic if possible — continued use lowers response and raises recurrence (IDSA/SHEA 2017). Drug choice has changed over three guideline versions, which is a favourite trap:

How the IDSA/SHEA recommendations changed
GuidelineInitial (non-fulminant) episode
2010Metronidazole for mild–moderate disease; oral vancomycin for severe disease
2017Oral vancomycin or fidaxomicin for non-severe and severe disease; metronidazole only if these are unavailable (non-severe)
2021 focused updateFidaxomicin preferred over a standard course of vancomycin; vancomycin remains an acceptable alternative
Regimens in the IDSA/SHEA guidelines (adults)
SituationRegimen
Initial episode (non-severe or severe)Fidaxomicin 200 mg twice daily for 10 days (preferred, 2021) or oral vancomycin 125 mg four times daily for 10 days
Non-severe, if the above are unavailableOral metronidazole 500 mg three times daily for 10 days
FulminantOral (or nasogastric) vancomycin 500 mg four times daily + IV metronidazole 500 mg every 8 hours; add rectal vancomycin if ileus
My Treatment Approach to Clostridioides difficile InfectionShort Mayo Clinic Proceedings video in which a specialist outlines a treatment approach to C. difficile infection.Video: Mayo Proceedings · 5:33 · Watch on YouTube · Loads from YouTube (privacy-enhanced mode) only when you press play.

How is recurrent C. difficile infection managed?

Recurrence after initial cure is a major problem in CDI. The 2021 focused update addresses two agents for it:

  • Fidaxomicin (standard 10-day or extended-pulsed regimen) is suggested over a standard vancomycin course for recurrent episodes. A tapered and pulsed vancomycin regimen or a standard vancomycin course are acceptable alternatives for a first recurrence.
  • Bezlotoxumab — a human monoclonal antibody against toxin B — is suggested as a co-intervention with standard antibiotics for a recurrence within the last 6 months. Other recurrence risk factors are age ≥ 65 years, immunocompromise and severe CDI at presentation.
  • The FDA warns that in patients with congestive heart failure, bezlotoxumab should be reserved for when benefit outweighs risk. Its maker discontinued it in January 2025, so it is now mainly an exam fact.
  • Faecal microbiota transplantation (FMT) is recommended for multiple recurrences after appropriate antibiotic treatment has failed (IDSA/SHEA 2017; unchanged in 2021). Vancomycin followed by rifaximin is another option for multiple recurrences.

When does C. difficile cause toxic megacolon and need surgery?

C. difficile colitis is the most common infectious cause of toxic megacolon; inflammatory bowel disease is the other major cause. Toxic megacolon is dilatation of the colon accompanied by systemic toxicity.

Commonly used diagnostic criteria for toxic megacolon (StatPearls)
RequirementCriteria
All patientsRadiographic colonic dilatation > 6 cm, especially transverse and ascending colon
At least 3 ofFever > 38 °C; heart rate > 120/min; neutrophilic leukocytosis > 10,500/µL; anaemia
At least 1 ofAltered sensorium; hypotension; hypovolaemia; electrolyte abnormalities

Fulminant CDI is treated with oral/nasogastric vancomycin plus IV metronidazole (rectal vancomycin if there is ileus). If surgery is needed for a severely ill patient, IDSA/SHEA 2017 recommends subtotal colectomy with preservation of the rectum.

How is the spread of C. difficile prevented in hospitals?

  • Hand hygiene with soap and water rather than alcohol rubs when caring for CDI patients — soap and water removes spores better.
  • Contact precautions and isolation continued for at least 48 hours after diarrhoea resolves; longer if ward CDI rates stay high.
  • Sporicidal environmental cleaning of rooms and equipment — surfaces act as reservoirs for spores.
  • Antibiotic stewardship — fewer high-risk antibiotics and shorter courses.
  • Probiotics: IDSA/SHEA 2017 found insufficient data to recommend them for primary prevention outside trials.

How is pseudomembranous colitis asked in NEET PG and INI-CET?

  • Drug that most commonly causes pseudomembranous colitis — clindamycin in the classic MCQ; cephalosporins and fluoroquinolones are also high-risk.
  • Organism — Clostridioides (Clostridium) difficile: gram-positive, anaerobic, spore-forming bacillus.
  • Toxins — A = enterotoxin, B = cytotoxin; binary toxin with ribotype 027.
  • Investigation of choice — stool testing (GDH/NAAT + toxin); colonoscopy shows raised yellowish plaques.
  • Drug of choice — current answer: fidaxomicin, or oral vancomycin; metronidazole only as a fallback for non-severe disease.
  • Recurrence — bezlotoxumab (anti-toxin B) and faecal microbiota transplantation.

Frequently asked questions

Which antibiotic most commonly causes pseudomembranous colitis?
Clindamycin is the classic answer in examinations. In practice, broad-spectrum antibiotics are the biggest risk factor: StatPearls lists penicillins, cephalosporins, fluoroquinolones and clindamycin as the classes most associated with C. difficile infection, while noting that almost any antibiotic can trigger it. Proton pump inhibitors, older age and hospital stay add to the risk.
What do toxins A and B of C. difficile do?
Toxin A (TcdA) is an enterotoxin and toxin B (TcdB) is a cytotoxin. Both are glycosylating exotoxins that damage the colonic epithelium and over-stimulate the innate immune system, drawing neutrophils into the mucosa; this inflammatory response produces the pseudomembranes. The hypervirulent ribotype 027 strain makes more of both toxins and also a binary toxin.
What does pseudomembranous colitis look like on colonoscopy?
The colonic mucosa is inflamed and shows raised yellowish, sometimes haemorrhagic, plaques or nodules that join together into pseudomembranes. They are usually up to about 2 cm across and scattered between patches of normal mucosa; in the most severe disease they become confluent and cover the whole colonic surface.
How is C. difficile infection confirmed in the laboratory?
Stool from a patient with at least three unexplained unformed stools in 24 hours is tested. IDSA/SHEA 2017 favours a multistep approach: a GDH antigen or NAAT screen combined with a toxin enzyme immunoassay. GDH is found in non-toxigenic strains too, so a toxin test is needed to show the strain is making toxin. Repeat testing and test of cure are discouraged.
What is the drug of choice for C. difficile colitis today?
The 2021 IDSA/SHEA focused update prefers fidaxomicin 200 mg twice daily for 10 days for an initial episode, with oral vancomycin 125 mg four times daily for 10 days as an acceptable alternative. Oral metronidazole is reserved for non-severe disease when neither is available. Older books that list metronidazole first reflect the 2010 guideline.
How is fulminant C. difficile infection treated?
Fulminant disease means hypotension or shock, ileus or megacolon. IDSA/SHEA 2017 recommends oral or nasogastric vancomycin 500 mg four times daily plus intravenous metronidazole 500 mg every 8 hours, adding rectal vancomycin if there is ileus. If surgery is required, subtotal colectomy with preservation of the rectum is advised.
What is bezlotoxumab and when is it used?
Bezlotoxumab is a human monoclonal antibody that neutralises C. difficile toxin B. It does not kill the organism, so it is given with standard antibiotics. The 2021 focused update suggests it for patients with a recurrence within the previous 6 months. The FDA advises caution in patients with congestive heart failure.
Why is soap and water preferred over alcohol hand rub for C. difficile?
C. difficile forms spores, and alcohol-based hand rubs do not reliably remove or kill them. Washing with soap and water physically removes spores from the hands. Hospitals also use contact precautions for at least 48 hours after diarrhoea settles and sporicidal cleaning, because spores survive on surfaces and equipment.

Sources

  1. StatPearls — Clostridioides difficile Infection (NCBI Bookshelf)
  2. StatPearls — Pseudomembranous Colitis (archived chapter, NCBI Bookshelf)
  3. StatPearls — Toxic Megacolon (NCBI Bookshelf)
  4. McDonald LC et al. IDSA/SHEA Clinical Practice Guidelines for C. difficile Infection: 2017 Update. Clin Infect Dis 2018 (PMC6018983)
  5. Johnson S et al. IDSA/SHEA 2021 Focused Update Guidelines on Management of C. difficile Infection in Adults (IDSA)
  6. Johnson S et al. 2021 Focused Update — Clin Infect Dis 2021;73:e1029–e1044 (PubMed 34164674)

For exam preparation and education only — not a substitute for clinical judgement or local guidelines. How we write and review these pages: editorial policy.

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