Development of the Genitourinary System — Kidneys, Bladder, Genital Ducts and Their Anomalies

Written & medically reviewed by the Kinase Medical Team · Last reviewed

Quick Answer

The urinary and genital systems arise mainly from intermediate mesoderm. Three kidneys form in sequence: pronephros, mesonephros and the permanent metanephros. The ureteric bud forms the ureter, pelvis, calyces and collecting tubules; metanephric blastema forms nephrons. Testosterone preserves the mesonephric (Wolffian) duct in males, while absent anti-Müllerian hormone lets the paramesonephric duct form the uterus.

Where does the genitourinary system come from?

During embryonic folding in the fourth week, the intermediate mesoderm forms a longitudinal swelling on the posterior body wall — the urogenital ridge. Its lateral part, the nephrogenic cord, forms the urinary system; its medial part, the gonadal (genital) ridge, forms the gonads. This shared origin explains why kidney and genital-tract anomalies so often occur together. For the full germ-layer map, see germ layers.

Germ-layer origin of genitourinary structures
StructureOrigin
Kidneys, ureters, gonads, genital ductsIntermediate mesoderm
Smooth muscle and connective tissue of the bladderSplanchnic (splanchnopleuric) mesoderm
Epithelium of bladder and urethraEndoderm of the urogenital sinus
Trigone epitheliumMesonephric-duct mesoderm, later replaced by endoderm
Lower two-thirds of vagina (epithelium)Endoderm — sinovaginal bulbs of the urogenital sinus
Autonomic nerves of the kidneyNeural crest
Renal Patho-Embryology – Renal Pathology | LecturioLecture linking kidney development to congenital anomalies such as agenesis, ectopia and fusion.Video: Lecturio Medical · 19:03 · Watch on YouTube · Loads from YouTube (privacy-enhanced mode) only when you press play.

What are the pronephros, mesonephros and metanephros?

Three sets of kidneys appear in a cranial-to-caudal sequence within the nephrogenic cord. Each overlaps with the next, and only the last persists as the adult kidney.

The three embryonic kidneys
KidneyAppearsLocationFunction and fate
PronephrosWeek 4Cervical regionNon-functional in humans; regresses by about day 25. Its duct extends caudally to the cloaca
MesonephrosLate week 4 onwardThoracolumbar (only units at about L1–L3 differentiate)About 40 pairs of units form; around 20 nephrons excrete small amounts of fluid between weeks 6 and 10. Degenerates, but its duct (Wolffian duct) persists in males
MetanephrosWeek 5Sacral region, then ascendsPermanent kidney — produces urine from about week 11; nephrogenesis continues until about week 32

What do the ureteric bud and metanephric blastema form?

At the start of week 5, the metanephric blastema (metanephric mesoderm) in the sacral region secretes GDNF, which acts on the RET receptor of the mesonephric duct and induces an outgrowth — the ureteric bud. The two tissues then induce each other: the bud branches into the blastema, and every branch tip induces a cap of blastema to form a nephron.

Derivatives of the two metanephric components
Ureteric bud (from mesonephric duct)Metanephric blastema (metanephric mesoderm)
UreterBowman's capsule (glomerular epithelium, podocytes)
Renal pelvis (first branching, week 6)Proximal convoluted tubule
Major calyces (next four generations)Loop of Henle
Minor calyces (next four, week 7)Distal convoluted tubule
Collecting tubules and ducts — 1 to 3 million by week 32Joins a collecting tubule to form the uriniferous tubule

Molecular control is examinable at a basic level: Pax2 is essential for specifying renal tissue, Lim1 patterns the pronephric and mesonephric ducts, and BMP4 (from the blastema) and Gremlin (from the bud) balance each other so that only one ureteric bud forms on each side. Disruption of these signals produces congenital anomalies of the kidney and urinary tract (CAKUT) — renal agenesis, dysplasia, multicystic dysplastic kidney and others.

How do the kidneys ascend and how does the bladder form?

The metanephric kidneys start low in the sacral region, close together. Between weeks 6 and 9, growth of the lower body draws them apart and they ascend to the lumbar region, rotating so the hilum faces medially. As they rise they pick up blood supply from successively higher branches of the aorta, and the lower branches degenerate. A kidney that stops ascending keeps a low, often multiple, arterial supply.

In week 4 the urorectal (urogenital) septum divides the cloaca into the rectum behind and the urogenital sinus in front. The urogenital sinus forms the bladder and urethra. The terminal mesonephric ducts are absorbed into the posterior bladder wall: the ureters come to open separately and higher, while the ducts' openings move down. The triangle between them becomes the trigone, whose mesodermal lining is later replaced by endoderm.

What do the mesonephric and paramesonephric ducts form in males and females?

Until about the sixth week both sexes have two pairs of genital ducts: the mesonephric (Wolffian) and the paramesonephric (Müllerian). Sex determination depends on the SRY gene on the Y chromosome, which drives the gonad to become a testis. Two testicular hormones then decide the duct fate:

  • Anti-Müllerian hormone (AMH, Müllerian-inhibiting substance) from Sertoli cells makes the Müllerian ducts regress.
  • Testosterone from Leydig cells (from weeks 9–10) stabilises and virilises the Wolffian ducts. Without testosterone the Wolffian ducts regress.
  • Dihydrotestosterone (DHT), made from testosterone by 5-alpha-reductase, masculinises the external genitalia.
Derivatives and remnants of the genital ducts
DuctMaleFemale
Mesonephric (Wolffian)Epididymis, ductus (vas) deferens, seminal vesicle, ejaculatory duct; appendix of epididymisRegresses — remnant Gartner duct (may form a Gartner cyst in the vaginal wall)
Paramesonephric (Müllerian)Regresses — remnants appendix of testis and prostatic utricleUterine tubes, uterus, cervix, upper one-third of vagina; remnant hydatid of Morgagni
Urogenital sinusUrinary bladder and urethraBladder, urethra, lower two-thirds of vagina (sinovaginal bulbs)
Three historical line drawings: an indifferent embryo with paired red mesonephric and blue paramesonephric ducts, then a female tract where the blue duct forms the uterine tube, uterus and vagina, then a male tract where the red duct forms the epididymis, vas deferens and seminal vesicle.
Indifferent stage (top) with both duct systems; female (middle) keeps the paramesonephric ducts as tubes, uterus and upper vagina; male (bottom) keeps the mesonephric ducts as epididymis, vas deferens and seminal vesicle.Image: Henry Vandyke Carter (Gray's Anatomy, 1918), Public domain

How do the uterus and vagina form?

The Müllerian ducts run lateral to the Wolffian ducts cranially, cross ventral to them, and meet in the midline caudally. Their unfused cranial ends form the uterine tubes. The caudal ends fuse (from about 6–8 weeks) into the uterovaginal primordium, which forms the uterus and cervix. A midline septum initially divides the fused cavity; it is normally resorbed.

The tip of the uterovaginal primordium meets the posterior wall of the urogenital sinus at the sinus (Müllerian) tubercle, which induces paired sinovaginal bulbs. These form a solid vaginal plate that later canalises to give the lower two-thirds of the vagina; the hymen separates the vaginal canal from the urogenital sinus. Most of the vaginal epithelium is therefore endodermal, while its muscular wall is mesenchymal.

What are the Müllerian (uterine) anomalies?

Female reproductive-tract anomalies are estimated in 0.1–3% of live births. Because the Müllerian ducts and mesonephros share intermediate mesoderm, every Müllerian anomaly should prompt a search for renal anomalies. MRI is considered the gold-standard imaging test. StatPearls follows the classic seven-class scheme:

Classes of Müllerian duct anomaly (StatPearls)
ClassAnomalyEmbryological errorKey fact
IAgenesis / hypoplasia (e.g. MRKH syndrome)Failure of development (~5 weeks)5–10% of anomalies; MRKH about 1 in 4,500 female births — absent uterus, cervix and upper vagina, normal ovaries, primary amenorrhoea
IIUnicornuate uterusArrested development of one ductAbout 20%; a non-communicating cavitary rudimentary horn can obstruct
IIIDidelphys uterusComplete failure of fusionAbout 5%; two uteri and two cervices, often a vaginal septum
IVBicornuate uterusIncomplete fusionAbout 10%; fundal cleft more than 1 cm; highest cervical incompetence rate
VSeptate uterusFailed resorption of the septumMost common — about 55%; poorest obstetric outcome; treated by septum resection
VIArcuate uterusNear-complete septal resorptionMild fundal indentation; limited data on outcomes
VIIDES-related (T-shaped cavity)Fetal diethylstilbestrol exposure alters HOX expressionAlso clear-cell carcinoma of vagina, ectopic pregnancy risk
APGO Basic Sciences - Topic 20: Mullerian AnomaliesProfessional-society lecture on Müllerian duct development and the classes of uterine anomaly.Video: Association of Professors of Gynecology and Obstetrics (APGO) · 9:35 · Watch on YouTube · Loads from YouTube (privacy-enhanced mode) only when you press play.

What is a horseshoe kidney and why does it form?

A horseshoe kidney is the most common renal fusion anomaly, seen in about 1 in 500 people, with a male-to-female ratio of about 2:1. The lower poles of the two metanephric blastemas fuse across the midline (in over 90% of cases) between the 4th and 6th weeks, before the renal capsule forms. The fused kidney is malrotated, with collecting systems facing anteriorly, and its ascent is classically said to be arrested by the inferior mesenteric artery at about L3.

Axial CT slice of the lower abdomen showing renal tissue on both sides joined by a band of kidney tissue that crosses the midline next to the vertebral body and great vessels.
Horseshoe kidney on axial CT: the two lower poles are joined by an isthmus of renal tissue crossing the midline. The isthmus usually lies low because its ascent is held back.Image: James Heilman, MD, CC BY-SA 4.0
  • Ureters pass anterior to the isthmus, which predisposes to ureteropelvic junction obstruction (up to 33%), hydronephrosis, stones and infection.
  • Blood supply is variable and multiple, arising wherever ascent stopped.
  • Associations: Edwards syndrome (trisomy 18) in about 67%, Turner syndrome in about 20%, Down syndrome in about 1%.
  • Higher risk of renal tumours, including Wilms tumour in children.

How do the external genitalia differentiate?

The external genitalia are indifferent until about week 9: a genital tubercle, paired urogenital (urethral) folds and labioscrotal swellings surround the cloacal membrane. DHT drives the male pattern; its absence (with maternal oestrogens) gives the female pattern, completed by about week 20.

Homologues of the external genitalia
Indifferent structureMale (DHT)Female
Genital tuberclePenis (glans, corpora)Clitoris
Urogenital (urethral) foldsFuse to form the penile (spongy) urethraLabia minora
Labioscrotal swellingsFuse to form the scrotumLabia majora (and mons pubis)

Incomplete fusion of the urethral folds gives hypospadias — a urethral opening on the ventral surface of the penis (glanular, coronal, penile or perineal). 5-alpha-reductase type 2 deficiency (46,XY) causes ambiguous genitalia at birth because DHT cannot be made, even though testosterone-dependent Wolffian structures are normal.

Frequently asked questions

Which embryonic kidney becomes the permanent kidney?
The metanephros, which appears in the fifth week in the sacral region and then ascends to the lumbar region between weeks 6 and 9. The pronephros never functions in humans and regresses by about day 25; the mesonephros works briefly between weeks 6 and 10 before degenerating, leaving its duct for the male genital tract.
What does the ureteric bud form?
The ureteric bud, an outgrowth of the mesonephric duct induced by GDNF from the metanephric blastema, forms the ureter, renal pelvis, major and minor calyces and the collecting tubules and ducts. The nephron itself — Bowman's capsule, proximal tubule, loop of Henle and distal tubule — comes from the metanephric blastema.
What are the adult derivatives of the mesonephric duct?
In males, testosterone preserves the mesonephric (Wolffian) duct as the epididymis, ductus deferens, seminal vesicle and ejaculatory duct, with the appendix of the epididymis as a remnant. In females it regresses, and its remnant, the Gartner duct, may form a Gartner cyst in the vaginal wall.
Which part of the vagina comes from the Müllerian ducts?
The upper one-third of the vagina comes from the fused Müllerian (paramesonephric) ducts, together with the uterus, cervix and uterine tubes. The lower two-thirds develops from the sinovaginal bulbs of the urogenital sinus, which form a vaginal plate that canalises. MRKH syndrome is defined by agenesis of the uterus, cervix and upper third of the vagina.
Which uterine anomaly is the most common?
The septate uterus, accounting for about 55% of Müllerian anomalies in StatPearls. It results from failure to resorb the midline septum after the ducts fuse, carries the poorest obstetric outcome (miscarriage and preterm birth) and is treated by surgical removal of the septum. The bicornuate uterus, by contrast, is a fusion defect.
Why must the kidneys be imaged in a woman with a Müllerian anomaly?
The Müllerian ducts form alongside the mesonephros from the same intermediate mesoderm, and their elongation depends on the Wolffian duct. Disturbances can therefore affect both systems — MRKH syndrome, for example, may be accompanied by renal anomalies. StatPearls advises that any female reproductive-tract anomaly should prompt investigation for renal anomalies.
What stops the ascent of a horseshoe kidney?
The isthmus joining the lower poles is classically trapped beneath the inferior mesenteric artery at about the level of L3, although some horseshoe kidneys lie even lower in the pelvis. Fusion occurs between the 4th and 6th weeks; the kidney is malrotated, and the ureters cross in front of the isthmus.
What does anti-Müllerian hormone do and where is it produced?
Anti-Müllerian hormone (Müllerian-inhibiting substance) is secreted by the Sertoli cells of the fetal testis and causes the paramesonephric (Müllerian) ducts to regress in males. Testosterone from Leydig cells separately maintains the Wolffian ducts. In females, the absence of AMH allows the Müllerian ducts to form the tubes, uterus, cervix and upper vagina.

Sources

  1. StatPearls — Embryology, Kidney, Bladder, and Ureter (NCBI Bookshelf)
  2. StatPearls — Embryology, Mullerian Ducts (Paramesonephric Ducts) (NCBI Bookshelf)
  3. StatPearls — Embryology, Sexual Development (NCBI Bookshelf)
  4. StatPearls — Embryology, Uterus (NCBI Bookshelf)
  5. StatPearls — Horseshoe Kidney (NCBI Bookshelf)

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