Amenorrhoea — Primary vs Secondary, Causes by Compartment and Step-wise Work-up

Written & medically reviewed by the Kinase Medical Team · Last reviewed

Quick Answer

Primary amenorrhoea is no menstruation by 15 years of age or 3 years after breast development began; secondary amenorrhoea is no menses for 3 months with previously regular cycles, or 6 months otherwise. Pregnancy is the commonest cause overall. Classify causes by compartment: hypothalamus, pituitary, ovary and outflow tract.

What is amenorrhoea, and how are primary and secondary defined?

Amenorrhoea is the absence of menstruation. It is a symptom, not a diagnosis — the exam task is always to find the level of the defect. StatPearls uses these working definitions:

Current definitions (StatPearls)
TypeDefinitionAlso evaluate when
PrimaryNo menstruation by 15 years of age, or 3 years after thelarcheNo breast development or other secondary sexual characteristics by 13 years (delayed puberty work-up)
SecondaryNo menses for ≥ 3 months in a woman with previously regular cycles, or ≥ 6 months in any woman who has menstruated at least onceAny unexplained change in a previously regular cycle

Breast budding (thelarche) normally starts between 8 and 10 years, and menarche follows within 2 to 3 years. In the US only about 2% of adolescent girls have not reached menarche by 15.

Primary amenorrhea - physiology, pathology, diagnosis, treatmentAnimated overview of how the hypothalamic–pituitary–ovarian axis and the outflow tract produce primary amenorrhoea when one level fails.Video: Osmosis from Elsevier · 9:32 · Watch on YouTube · Loads from YouTube (privacy-enhanced mode) only when you press play.

How are the causes of amenorrhoea classified by compartment?

Normal menstruation needs four working parts: the hypothalamus (pulsatile GnRH), the anterior pituitary (FSH and LH), the ovary (oestradiol and, after ovulation, progesterone) and the outflow tract (endometrium, cervix and vagina). A defect at any level stops bleeding. Almost every cause except natural menopause can present as either primary or secondary amenorrhoea.

Diagram of the hypothalamic–pituitary–gonadal axis: the hypothalamus releases GnRH, the anterior pituitary releases LH and FSH, the ovaries make oestradiol and progesterone, and curved arrows show negative feedback to the pituitary and hypothalamus.
The hypothalamic–pituitary–ovarian axis. A defect above the ovary gives low FSH (hypogonadotropic); ovarian failure removes negative feedback, so FSH rises (hypergonadotropic).Image: Artoria2e5, CC BY 3.0
Compartment classification with classic examples
CompartmentFSH / oestradiolPrimary-amenorrhoea examplesSecondary-amenorrhoea examples
HypothalamusLow / low (hypogonadotropic hypogonadism)Constitutional delay, Kallmann syndrome, functional hypothalamic amenorrhoeaFunctional hypothalamic amenorrhoea (stress, weight loss, exercise), TB or other infection
PituitaryLow / lowPituitary tumours, hypopituitarismProlactinoma, Sheehan syndrome
OvaryHigh / low (hypergonadotropic hypogonadism)Turner syndrome (45,X), pure gonadal dysgenesis incl. Swyer (46,XY)Primary ovarian insufficiency; PCOS (chronic anovulation, FSH usually normal)
Outflow tractNormal / normalImperforate hymen, transverse vaginal septum, MRKH, CAISAsherman syndrome, cervical stenosis

What are the commonest causes of primary amenorrhoea?

StatPearls lists three big groups for primary amenorrhoea: gonadal dysfunction (about 43%), constitutional delay of growth and puberty (about 14%) and Müllerian agenesis (10–15%). Gonadal dysfunction is most often gonadal dysgenesis, classically Turner syndrome (45,X or a mosaic).

  • Turner syndrome — 45,X; about 1 in 2,000 to 2,500 live female births. Short stature with no secondary sexual characteristics is the hallmark of gonadal dysgenesis. Look for a low hairline, high-arched palate, webbed neck, widely spaced nipples, multiple pigmented naevi, cubitus valgus and a short fourth metacarpal. Ovaries are streak gonads, so FSH is high.
  • Swyer syndrome — 46,XY pure gonadal dysgenesis. The testes never work, so there is no anti-Müllerian hormone (AMH) and no testosterone in utero: the girl has a uterus and tubes, female external genitalia and streak gonads.
  • Kallmann syndrome — congenital hypogonadotropic hypogonadism with anosmia or hyposmia. GnRH neurons fail to migrate from the olfactory placode to the hypothalamus, so FSH and LH stay low.
  • Constitutional delay of growth and puberty and functional hypothalamic amenorrhoea — the commonest central causes; both reduce GnRH and can be hard to tell apart.
  • Outflow obstruction — imperforate hymen, transverse vaginal septum, vaginal agenesis or cervical atresia, typically with cyclic abdominal pain and normal breasts.

How do you tell MRKH syndrome from complete androgen insensitivity?

Both present as a teenager with normal breasts, a blind vaginal pouch and no uterus. The difference is the karyotype and the gonad. Mayer-Rokitansky-Küster-Hauser (MRKH) syndrome is Müllerian agenesis in a 46,XX girl with normal ovaries. Complete androgen insensitivity syndrome (CAIS) is a 46,XY individual with functioning testes whose androgen receptors do not respond.

MRKH vs CAIS — the classic comparison
FeatureMRKH (Müllerian agenesis)CAIS (testicular feminisation)
Karyotype46,XX46,XY
GonadsNormal ovaries — ovulation occursTestes (abdominal or inguinal)
BreastsNormal (ovarian oestrogen)Well developed (testosterone aromatised to oestrogen)
Pubic and axillary hairNormalSparse or absent
Uterus / upper vaginaAbsent or rudimentaryAbsent (AMH from testes)
Serum testosteroneNormal female rangeElevated
Associated anomaliesUrinary tract anomalies, e.g. unilateral renal agenesisGonadal tumour risk — gonadectomy, often delayed to early adulthood
Share of primary amenorrhoea10–15%Less common

What causes secondary amenorrhoea?

Once pregnancy and lactation are excluded, StatPearls notes that most non-physiological secondary amenorrhoea comes from a handful of conditions. In one large breakdown, about 30–40% have chronic anovulation (mostly PCOS), about 35% functional hypothalamic amenorrhoea, about 10% hyperprolactinaemia and about 10% primary ovarian insufficiency. Intrauterine adhesions make up most of the rest.

Major causes of secondary amenorrhoea and their clues
CauseTypical clueKey test
PCOSHirsutism, acne, obesity; the commonest cause when there is androgen excessAndrogens, pelvic ultrasound
Functional hypothalamic amenorrhoeaEating disorder, heavy exercise, major stress — a diagnosis of exclusionLow or normal FSH/LH, low oestradiol
HyperprolactinaemiaGalactorrhoea, headache, peripheral field loss (prolactinoma); antipsychotics or opiatesSerum prolactin, then pituitary MRI
Primary ovarian insufficiencyHot flushes, age under 40FSH in the menopausal range on two occasions
Sheehan syndromeSevere postpartum haemorrhage, then failure to lactatePituitary hormone panel
Asherman syndromeAmenorrhoea after a D&C, especially postpartum or post-miscarriageHysteroscopy (gold standard)
Thyroid diseaseHypo- or hyperthyroid featuresTSH
Secondary amenorrheaWalks through the main causes of secondary amenorrhoea — PCOS, hypothalamic, prolactin, ovarian insufficiency and Asherman — and the hormone pattern of each.Video: Osmosis from Elsevier · 12:29 · Watch on YouTube · Loads from YouTube (privacy-enhanced mode) only when you press play.

What are Asherman syndrome and primary ovarian insufficiency?

Asherman syndrome is intrauterine adhesion formation after the basal layer of the endometrium is destroyed, so the endometrium cannot grow despite normal hormones. It follows a dilatation and curettage for termination of pregnancy, missed or incomplete miscarriage or retained placenta; tuberculosis and schistosomiasis are less common causes. It may follow up to 13% of first-trimester terminations and 30% of D&Cs after a late miscarriage. Ultrasound misses it; hysteroscopy is the gold standard for diagnosis and allows treatment at the same sitting.

Primary ovarian insufficiency (POI) is loss of ovarian function before 40 years. It affects about 1–2% of women under 40 and about 0.1% under 30. StatPearls describes diagnosis after 4–6 months of amenorrhoea with two FSH values in the menopausal range (above 40 IU/L) about a month apart and low oestradiol. Causes include Turner syndrome and mosaics, autoimmune ovarian failure, gene mutations, chemotherapy and radiotherapy.

Menstrual cycle chart over 28 days showing follicle and corpus luteum development at the top, body temperature, oestradiol, LH, FSH and progesterone curves in the middle, and endometrial thickness at the bottom.
A normal cycle: oestradiol builds the endometrium, the LH surge triggers ovulation, and the fall of progesterone and oestradiol at the end of the luteal phase causes shedding. Withdrawal-bleed tests copy this last step.Image: Speck-Made, CC BY-SA 3.0
Understanding Early Menopause: Premature Ovarian InsufficiencyShort revision of primary ovarian insufficiency: definition, causes, the FSH-based diagnosis and why hormone replacement matters.Video: Zero To Finals · 6:38 · Watch on YouTube · Loads from YouTube (privacy-enhanced mode) only when you press play.

What is the step-wise work-up, including the progestin challenge test?

  1. History and examination — weight change, exercise, stress, drugs (antipsychotics, opiates, contraceptives), galactorrhoea, headache or visual change, hirsutism, previous D&C or postpartum haemorrhage; Tanner staging of breasts and pubic hair; look for Turner stigmata.
  2. Urine pregnancy test in every patient.
  3. Baseline hormones — FSH, LH, oestradiol, prolactin and TSH; androgens if there are signs of excess.
  4. Pelvic ultrasound — is there a uterus? Are the ovaries normal, polycystic or streaks? (In primary amenorrhoea this is part of the first round.)
  5. Karyotype when FSH is high in primary amenorrhoea, or when the uterus is absent; pelvic MRI if anatomy is unclear.
  6. Hormone challenge tests if the picture is still unclear (below).
Progestin and oestrogen–progestin challenge tests (StatPearls)
TestHow it is doneBleed occursNo bleed
Progestin challengeOral medroxyprogesterone acetate 5–10 mg daily for 10 daysEndogenous oestrogen is adequate and the outflow tract works — think anovulation (PCOS)Too little oestrogen (POI, hypothalamic or pituitary failure), damaged endometrium (Asherman) or outflow obstruction
Oestrogen + progestin challengeAbout 3 weeks of combined oestrogen and progestin (usually a combined pill), then stopEndometrium and outflow are normal — the problem is lack of oestrogen (ovary or above)Endometrial damage (Asherman) or outflow obstruction

How does outflow tract obstruction present?

Girls with an obstructed outflow tract usually present around the expected age of menarche with cyclic lower abdominal pain, otherwise normal puberty and no bleeding. Menstrual blood collects behind the obstruction (haematocolpos in the vagina, haematometra in the uterus).

  • Imperforate hymen — about 1 in 1,000 female births. Examination shows a bulging, bluish membrane at the introitus without a hymenal fringe that distends on Valsalva.
  • Transverse vaginal septum — failure of the junction between the Müllerian ducts and the vaginal plate; no bulge at the introitus.
  • Vaginal agenesis / cervical atresia — failure of canalisation.
  • A patent vagina and a normal cervix on examination exclude vaginal agenesis, CAIS and outflow obstruction.

Which amenorrhoea traps keep appearing in NEET PG and INI-CET?

  • Anosmia + amenorrhoea = Kallmann syndrome (low FSH/LH), not Turner (high FSH).
  • Short stature + absent breasts + high FSH = Turner syndrome — order a karyotype.
  • 46,XY with a uterus = Swyer syndrome (no AMH); 46,XY without a uterus and with breasts = CAIS.
  • Amenorrhoea after a D&C with normal hormones and no withdrawal bleed even to oestrogen + progestin = Asherman syndrome; diagnose and treat by hysteroscopy.
  • Failure to lactate after PPH = Sheehan syndrome — the first symptom.
  • Galactorrhoea on antipsychotics = drug-induced hyperprolactinaemia; check prolactin and TSH.
  • Use 15 years (or 3 years after thelarche) for primary amenorrhoea, and 13 years with no secondary sexual characteristics as the trigger for a delayed-puberty work-up.

Frequently asked questions

What is the definition of primary amenorrhoea?
Primary amenorrhoea is no menstruation by 15 years of age, or within 3 years of the start of breast development. A girl of 13 with no breast budding or other secondary sexual characteristics also needs assessment for delayed puberty. Normal breast budding begins between 8 and 10 years, and menarche usually follows within two to three years.
What is the commonest cause of amenorrhoea?
Pregnancy is the commonest cause of amenorrhoea overall, which is why a urine pregnancy test comes first in every patient. Among non-physiological causes of secondary amenorrhoea, chronic anovulation from PCOS and functional hypothalamic amenorrhoea are the largest groups, followed by hyperprolactinaemia and primary ovarian insufficiency at about ten percent each.
What is the commonest cause of primary amenorrhoea?
Gonadal dysfunction accounts for about 43% of primary amenorrhoea, most often gonadal dysgenesis such as Turner syndrome. Constitutional delay of growth and puberty accounts for about 14% and Müllerian agenesis (MRKH syndrome) for 10–15%. Turner syndrome is recognised by short stature, absent breast development and a raised FSH.
How do you differentiate MRKH syndrome from androgen insensitivity?
Both have normal breasts, a blind vagina and no uterus. MRKH is 46,XX with normal ovaries, normal pubic hair and female-range testosterone, and often a renal anomaly. Complete androgen insensitivity is 46,XY with testes, sparse or absent pubic and axillary hair and raised testosterone. Karyotype settles it; the gonads in CAIS carry a tumour risk.
What does a negative progestin challenge test mean?
No withdrawal bleed after oral medroxyprogesterone 5–10 mg daily for 10 days means either too little endogenous oestrogen (primary ovarian insufficiency, hypothalamic or pituitary failure), a damaged endometrium such as Asherman syndrome, or an obstructed outflow tract. An oestrogen plus progestin challenge then separates oestrogen deficiency from a uterine or outflow problem.
How is primary ovarian insufficiency diagnosed?
Primary ovarian insufficiency is loss of ovarian function before 40 years of age. StatPearls describes diagnosis in a woman with 4–6 months of amenorrhoea, low oestradiol and two FSH values in the menopausal range, above 40 IU/L, taken about a month apart, after thyroid, prolactin and pregnancy causes have been excluded.
Why does Sheehan syndrome cause amenorrhoea?
Sheehan syndrome is ischaemic necrosis of the anterior pituitary after severe postpartum haemorrhage and hypovolaemia. Loss of prolactin causes failure to lactate, the first and most common symptom; loss of FSH and LH causes amenorrhoea. The necrosis can cause panhypopituitarism or a selective loss of pituitary function, so the diagnosis is not always obvious right after childbirth.
What is the gold standard investigation for Asherman syndrome?
Hysteroscopy is the gold standard for Asherman syndrome because it shows the extent of the intrauterine adhesions directly and allows adhesiolysis at the same time. Ultrasound and other imaging can miss the adhesions. The typical history is amenorrhoea or scanty periods after a dilatation and curettage, especially after miscarriage or delivery.

Sources

  1. StatPearls — Primary Amenorrhea (NCBI Bookshelf)
  2. StatPearls — Secondary Amenorrhea (NCBI Bookshelf)
  3. StatPearls — Amenorrhea (NCBI Bookshelf)
  4. StatPearls — Primary Ovarian Insufficiency (NCBI Bookshelf)
  5. StatPearls — Asherman Syndrome (NCBI Bookshelf)
  6. StatPearls — Sheehan Syndrome (NCBI Bookshelf)
  7. StatPearls — Kallmann Syndrome (NCBI Bookshelf)
  8. StatPearls — Androgen Insensitivity Syndrome (NCBI Bookshelf)
  9. StatPearls — Turner Syndrome (NCBI Bookshelf)
  10. StatPearls — Imperforate Hymen (NCBI Bookshelf)

For exam preparation and education only — not a substitute for clinical judgement or local guidelines. How we write and review these pages: editorial policy.

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